plots etc..

Author: PHvanLent

figures/figures_paper/Coefficient_LM_Analysis.drawio

@@ -2,8 +2,8 @@
 <sbml xmlns="http://www.sbml.org/sbml/level2/version4" level="2" version="4">
   <model>
     <listOfCompartments>
-      <compartment id="e" spatialDimensions="3" size="1" constant="true"/>
       <compartment id="c" spatialDimensions="3" size="1" constant="true"/>
+      <compartment id="e" spatialDimensions="3" size="1" constant="true"/>
     </listOfCompartments>
     <listOfSpecies>
       <species id="e_gluc" compartment="e" initialAmount="3.33" substanceUnits="mole" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>

figures/figures_paper/Coefficient_LM_Analysis.png

@@ -2,8 +2,8 @@
 <sbml xmlns="http://www.sbml.org/sbml/level2/version4" level="2" version="4">
   <model>
     <listOfCompartments>
-      <compartment id="c" spatialDimensions="3" size="1" constant="true"/>
       <compartment id="e" spatialDimensions="3" size="1" constant="true"/>
+      <compartment id="c" spatialDimensions="3" size="1" constant="true"/>
     </listOfCompartments>
     <listOfSpecies>
       <species id="e_gluc" compartment="e" initialAmount="3.33" substanceUnits="mole" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>

figures/figures_paper/pathwayA_process_variables.png

@@ -1,4 +1,6 @@
 """
+This script was GPT-generated
+
 config_builder.py
 -----------------
 This script helps a user build a configuration YAML file for optimization experiments.
@@ -12,8 +14,6 @@
     python config_builder.py --target product_A --output_dir ./configs/ --n_cycles 5
 
 All key variables are annotated below so a new user can understand what each parameter means.
-
-This script was GPT-generated
 """
 
 import argparse