added plots (.svgs) and fix of compartments (no influence on results)

Author: PHvanLent

README.md

@@ -5,7 +5,6 @@
 3. models: consists of the bioprocess models 
 4. scripts: consists of the building of bioprocess models (build_models dir), the analysis (two directoreis), and a setup_configs for the construction of the config files for simulation.
 
-
 ```
 BenchmarkProjectDSMF
 ├── data
@@ -40,8 +39,13 @@ BenchmarkProjectDSMF
 └── tests
 ```
 
+#### Simulation data generated repo
+Datasets generated through config files that were used for the downstream analysis
+can be found at the [4tu](10.4121/f2833f74-2586-4632-8c44-7d98ead11a34) repository.
+
 #### Running your own simulated DBTL scenarios (TODO)
 We provide a workflow for running simulated DBTL scenarios
 Step 1: Construct a config file using a [command line interface](scripts/ChassisConfig(NOTTESTEDYET).py) or make a manual config setup python scripts inspired by one of the scripts used in this [work](scripts/setup_configs) 
 
 
+