succeededt test

Author: PHvanLent

scripts/setupconfigfile_gridsearch_pathwayB.py

@@ -12,10 +12,10 @@
 output_dir = "data/config_files_yml/pathwayB/experiment1"
 Path(output_dir).mkdir(parents=True, exist_ok=True)
 
-# Number_of_Samples = [50, 100]
-# Screening_Ratio = [4, 6]
-# Positions = [4, 6, 8, 10]
-# Features = [4, 6, 10]
+Number_of_Samples = [50, 100,200]
+Screening_Ratio = [1, 2, 4, 6]
+Positions = [4, 6, 8, 10]
+Features = [6, 10,12]
 
 for F in Features:
     for P in Positions:
@@ -44,7 +44,7 @@
                 beta = "dynamic"
                 noise_type = "homoscedastic"
                 model_filepath = "models/bioprocess_models"
-                model_name = "batch_model_pathwayA"
+                model_name = "batch_model_pathwayB"
 
                 # promoter_values = [0.5, 1, 1.5, 2]
                 promoter_values = [1, 2, 3, 4]
@@ -78,19 +78,19 @@
                 config = {'identifier': f"{datetime.date.today().isoformat()}_{model_name}_{target}_run{run_id}"}
 
                 parameter_names_and_values = {
-                    "enzyme_7": promoter_values,
                     "enzyme_12": promoter_values,
-                    "enzyme_3": promoter_values,
-                    "enzyme_9": promoter_values,
-
+                    "enzyme_7": promoter_values,
                     "enzyme_6": promoter_values,
-                    "enzyme_5": promoter_values,
-                    "enzyme_2": promoter_values,
                     "enzyme_1": promoter_values,
+
+                    "enzyme_2": promoter_values,
+                    "enzyme_5": promoter_values,
+                    "enzyme_9": promoter_values,
+                    "enzyme_3": promoter_values,
                     #
-                    "enzyme_4": promoter_values,
                     "enzyme_10": promoter_values,
                     "enzyme_11": promoter_values,
+                    "enzyme_4": promoter_values,
                     "enzyme_8": promoter_values,
                 }