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docs: adds draw io diagrams to this repo (#71)
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diagrams/high_level/general_data_flow.drawio

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diagrams/high_level/general_data_flow.drawio.svg

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diagrams/low_level/aind-data-transfer-service/aind-data-transfer-service-k8s.drawio

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diagrams/low_level/aind-metadata-service/aind-metadata-service-k8s.drawio

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diagrams/low_level/aind-metadata-service/aind-metadata-service-k8s.drawio.svg

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diagrams/low_level/aind-metadata-service/metadata_service_overview_diagram.drawio.svg

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