docs: add tools, update links to internal pages

Author: dbirman

docs/source/explore_analyze.md

@@ -10,10 +10,13 @@
 
 [Automate my analysis](explore_analyze/code_ocean.md#analysis-framework) using the Analysis Framework.
 
+[Explore tools](explore_analyze/tools.md) for annotation and data exploration.
+
 ```{toctree}
 :hidden:
 
 explore_analyze/quality_control
 explore_analyze/data_portal
 explore_analyze/code_ocean
+explore_analyze/tools
 ```

docs/source/explore_analyze/tools.md

@@ -0,0 +1,7 @@
+# Tools
+
+## IBL Ephys Alignment GUI
+
+[ibl-ephys-alignment-gui](https://github.com/AllenNeuralDynamics/ibl-ephys-alignment-gui)
+
+GUI developed by the International Brain Laboratory for aligning electrophysiology data with histology data.

docs/source/index.md

@@ -16,6 +16,8 @@
 
 [Issue with scientific computing software](https://github.com/AllenNeuralDynamics/aind-scientific-computing/issues).
 
+[Issue with SIPE instrumentation](https://apps.powerapps.com/play/e/9084dabc-d707-e1bf-8113-685be25cac15/a/cb338490-e23d-48e6-9e6d-e600b8d17dd4?tenantId=32669cd6-737f-4b39-8bdd-d6951120d3fc&hidenavbar=true&skipmetadata=true).
+
 ## I need an account...
 
 Follow these links to request access to:
@@ -28,7 +30,7 @@ Follow these links to request access to:
 
 ## I want to learn about...
 
-[Data governance](philosophy.md)
+[Data science in general](philosophy.md) at AIND.
 
 ```{toctree}
 :maxdepth: 2

docs/source/philosophy.md

@@ -4,8 +4,12 @@ I want to learn about...
 
 [Data organization](philosophy/data_organization.md)
 
+[Data governance](philosophy/data_governance.md)
+
 [Scientific Computing](philosophy/scicomp-teams.md) at AIND.
 
+[Software instrumentation](https://alleninstitute.sharepoint.com/sites/Instrumentation/MPE_Software/Home.aspx) at AIND.
+
 ```{toctree}
 :hidden: