BFBArchitect/requirements.txt at main · AmpliconSuite/BFBArchitect · GitHub

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apricot-select==0.6.1
biopython==1.86
charset-normalizer==3.4.4
CNVkit==0.9.10
contourpy==1.3.3
cycler==0.12.1
filelock==3.20.0
fonttools==4.60.1
fsspec==2025.10.0
Jinja2==3.1.6
joblib==1.5.2
kiwisolver==1.4.9
llvmlite==0.45.1
MarkupSafe==3.0.3
matplotlib==3.10.7
mpmath==1.3.0
networkx==3.5
nose==1.3.7
numba==0.62.1
numpy==2.3.4
nvidia-cublas-cu12==12.4.5.8
nvidia-cuda-cupti-cu12==12.4.127
nvidia-cuda-nvrtc-cu12==12.4.127
nvidia-cuda-runtime-cu12==12.4.127
nvidia-cudnn-cu12==9.1.0.70
nvidia-cufft-cu12==11.2.1.3
nvidia-curand-cu12==10.3.5.147
nvidia-cusolver-cu12==11.6.1.9
nvidia-cusparse-cu12==12.3.1.170
nvidia-cusparselt-cu12==0.6.2
nvidia-nccl-cu12==2.21.5
nvidia-nvjitlink-cu12==12.4.127
nvidia-nvtx-cu12==12.4.127
packaging==25.0
pandas==2.3.3
pillow==12.0.0
pomegranate==1.1.2
PuLP==3.3.0
pyfaidx==0.9.0.3
pyparsing==3.2.5
pysam==0.23.3
python-dateutil==2.9.0.post0
pytz==2025.2
reportlab==4.4.4
scikit-learn==1.7.2
scipy==1.16.3
setuptools==80.9.0
six==1.17.0
sympy==1.13.1
threadpoolctl==3.6.0
torch==2.6.0
tqdm==4.67.1
triton==3.2.0
typing_extensions==4.15.0
tzdata==2025.2