AdmixTools/Makefile.mac at master · AnstMikh/AdmixTools · GitHub

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HOMEL=$(PWD)
TOP=../bin
BIN=$(HOMEL)/../bin

override LDLIBS += -lgsl -lblas -llapack -lgfortran -lm -lnick
# Some Linux distributions require separate lapacke library
# override LDLIBS += -llapacke
override LDFLAGS += -L./nicksrc
override CFLAGS += -c -g -Wimplicit -I./ -I./nicksrc
# Mac additions using homebrew installations
#override CFLAGS += -I/usr/local/opt/openblas/include -I/usr/local/opt/gsl/include
#override LDFLAGS += -L/usr/local/opt/openblas/lib -L/usr/local/opt/gsl/lib
override LDFLAGS +=  -lgfortran
CPPFLAGS="-I/usr/local/opt/lapack/include"
# Harvard Medical School O2 cluster additions

ND = nicksrc
NLIB = $(ND)/libnick.a

PROGS= qp3Pop qpDstat qpF4ratio qpAdm qpWave qp4diff dowtjack expfit.sh  qpBound qpGraph qpreroot qpff3base qpDpart qpfstats qpfmv
PROGS3 = rolloff rolloffp convertf mergeit simpjack2


PROGS2 = rexpfit.r  wtjack.pl

all: $(NLIB) $(PROGS)


$(NLIB):
	$(MAKE) -C $(ND)

## an ubuntu user found he needed: make all LDLIBS="-llapack"

statsubs.o:     tables nicksrc/statsubs.c
	$(CC)  $(CFLAGS) -o statsubs.o nicksrc/statsubs.c

expfit.sh:	expfit.templ
	sed -e "s&BBBIN&$(BIN)&" < expfit.templ > expfit.sh
	chmod +x expfit.sh

qpDstat: $(NLIB) qpDstat.o qpsubs.o mcio.o ldsubs.o admutils.o egsubs.o regsubs.o

qpDpart: $(NLIB) qpDpart.o qpsubs.o mcio.o ldsubs.o admutils.o egsubs.o regsubs.o

qp3Pop: $(NLIB) qp3Pop.o qpsubs.o mcio.o ldsubs.o admutils.o egsubs.o regsubs.o

qp4diff: $(NLIB) qp4diff.o qpsubs.o mcio.o ldsubs.o admutils.o egsubs.o regsubs.o

qpF4ratio: $(NLIB) qpF4ratio.o qpsubs.o mcio.o ldsubs.o admutils.o egsubs.o regsubs.o

qpF4ratio: $(NLIB) qpF4ratio.o qpsubs.o mcio.o ldsubs.o admutils.o egsubs.o regsubs.o

qpf4diff: $(NLIB) f4diff.o qpsubs.o mcio.o ldsubs.o admutils.o egsubs.o regsubs.o

qpfstats: $(NLIB) qpfstats.o qpgsubs.o qpsubs.o mcio.o admutils.o egsubs.o regsubs.o ldsubs.o

qpfmv: $(NLIB) qpfmv.o qpsubs.o mcio.o ldsubs.o admutils.o  egsubs.o regsubs.o  eigsubs.o eigx.o


rolloff: $(NLIB) rolloff.o qpsubs.o mcio.o ldsubs.o admutils.o egsubs.o regsubs.o

rolloffp: $(NLIB) rolloffp.o qpsubs.o mcio.o ldsubs.o admutils.o egsubs.o regsubs.o

qpBound: $(NLIB) qpBound.o qpsubs.o mcio.o ldsubs.o admutils.o  egsubs.o regsubs.o

dowtjack: $(NLIB) dowtjack.o

convertf: $(NLIB) convertf.o mcio.o admutils.o egsubs.o h2d.o exclude.o

mergeit: $(NLIB) mergeit.o mcio.o admutils.o egsubs.o h2d.o exclude.o

grabpars: $(NLIB) grabpars.o

qpff3base: $(NLIB) qpff3base.o qpgsubs.o qpsubs.o mcio.o admutils.o egsubs.o regsubs.o ldsubs.o

qpAdm: $(NLIB) qpAdm.o qpsubs.o mcio.o ldsubs.o admutils.o  egsubs.o regsubs.o f4rank.o  eigsubs.o eigx.o

qpWave: $(NLIB) qpWave.o qpsubs.o mcio.o ldsubs.o admutils.o  egsubs.o regsubs.o f4rank.o eigsubs.o eigx.o

simpjack2: $(NLIB) simpjack2.o

install:	all dirs tables
	mkdir -p $(TOP)
	cp $(PROGS) $(TOP)
	cp $(PROGS2) $(TOP)

uninstall:
	rm -f tables
	rm -f $(TOP)/*

tables:
	echo "tables made"  > tables
	cp twtable  $(HOMEL)/admixtables

dirs:
	mkdir -p  $(HOMEL)/admixtables

clean:
	rm -f *.o
	rm -f *junk*
	rm -f core
	$(MAKE) -C $(ND) clean
	rm -f $(PROGS)

clobber: clean rmdirs uninstall


rmdirs:
	rm -rf $(HOMEL)/admixtables

## gsl-config may help here


qpGraph: $(NLIB) qpGraph.o gslqp.o qpgsubs.o qpsubs.o mcio.o ldsubs.o admutils.o egsubs.o regsubs.o


qpreroot: qpreroot.o qpgsubs.o qpsubs.o mcio.o ldsubs.o admutils.o egsubs.o regsubs.o

gcount: gcount.o qpsubs.o mcio.o ldsubs.o admutils.o egsubs.o regsubs.o

kimf: kimf.o gslkim.o qpgsubs.o qpsubs.o mcio.o ldsubs.o admutils.o egsubs.o regsubs.o