Skip to content

Commit 33909d9

Browse files
JacobAdamsenJacob Hilmar Adamsen
JacobAdamsen
and
Jacob Hilmar Adamsen
authored
Update of Scaling tutorial (#61)
* Update of Scaling tutorial * Fixed file links * Fix reference to libdef and AMMR * Deleted unnecessary STL/Anysuf files * Fixed reference in MyScalingFunction.any --------- Co-authored-by: Jacob Hilmar Adamsen <jha@anybodytech.com>
1 parent e6cd51c commit 33909d9

100 files changed

Lines changed: 398078 additions & 853 deletions

File tree

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

‎Scaling/Downloads/Final_Download.zip‎

19.4 MB
Binary file not shown.

‎Scaling/Downloads/lesson1a.Main.any‎

Lines changed: 4 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -15,21 +15,17 @@ Main = {
1515
// Todo. Add the model elements such as
1616
// segments, joints, and muscles here.
1717

18-
AnySeg SourceFemur =
19-
{
18+
AnySeg SourceFemur = {
2019
Mass = 0; Jii = {0, 0, 0};
21-
AnyDrawSurf Surface =
22-
{
20+
AnyDrawSurf Surface = {
2321
FileName = "SourceFemur.stl";
2422
RGB = {222,202,176}/256;
2523
};
2624
};
2725

28-
AnySeg TargetFemur =
29-
{
26+
AnySeg TargetFemur = {
3027
Mass = 0; Jii = {0, 0, 0};
31-
AnyDrawSurf Surface =
32-
{
28+
AnyDrawSurf Surface = {
3329
FileName = "TargetFemur.stl";
3430
RGB = {256,256,0}/256;
3531
};

‎Scaling/Downloads/lesson1b.Main.any‎

Lines changed: 21 additions & 25 deletions
Original file line numberDiff line numberDiff line change
@@ -15,50 +15,47 @@ Main = {
1515
// Todo. Add the model elements such as
1616
// segments, joints, and muscles here.
1717

18-
AnySeg SourceFemur =
19-
{
18+
AnySeg SourceFemur = {
2019
Mass = 0; Jii = {0, 0, 0};
21-
AnyDrawSurf Surface =
22-
{
20+
AnyDrawSurf Surface = {
2321
FileName = "SourceFemur.stl";
2422
RGB = {222,202,176}/256;
2523
};
26-
AnyDrawSurf SurfaceMorphed =
27-
{
24+
25+
AnyDrawSurf SurfaceMorphed = {
2826
FileName = "SourceFemur.stl";
2927
AnyFunTransform3D &ref = ..MyTransform3;
3028
};
3129
};
3230

33-
AnySeg TargetFemur =
34-
{
31+
AnySeg TargetFemur = {
3532
Mass = 0; Jii = {0, 0, 0};
36-
AnyDrawSurf Surface =
37-
{
33+
AnyDrawSurf Surface = {
3834
FileName = "TargetFemur.stl";
3935
RGB = {256,256,0}/256;
4036
};
41-
4237
};
4338

44-
AnyFunTransform3DLin2 MyTransform =
45-
{
39+
AnyFunTransform3DLin2 MyTransform = {
4640
//PreTransforms = {};
47-
Points0 =
48-
{{-0.00906139, 0.36453, 0.0175591}, // fovea capitis
49-
{0.0358368, -0.0100391, -0.0162062}, // lateral anterior condyle
50-
{0.0295267, -0.0112881, 0.0194889}, // medial anterior condyle
51-
{0.0282045, 0.157599, -0.0172379}, // anterior mid shaft
52-
{-0.0245689, -0.00701566, -0.0238393}, // lateral posterior condyle
53-
{-0.0320739, -0.00877602, 0.0244234}};// medial posterior condyle
41+
Points0 = {
42+
{-0.00906139, 0.36453, 0.0175591}, // fovea capitis
43+
{0.0358368, -0.0100391, -0.0162062}, // lateral anterior condyle
44+
{0.0295267, -0.0112881, 0.0194889}, // medial anterior condyle
45+
{0.0282045, 0.157599, -0.0172379}, // anterior mid shaft
46+
{-0.0245689, -0.00701566, -0.0238393}, // lateral posterior condyle
47+
{-0.0320739, -0.00877602, 0.0244234} // medial posterior condyle
48+
};
5449

55-
Points1 =
56-
{{0.289913,0.420538,0.0138931}, // fovea capitis
50+
Points1 = {
51+
{0.289913,0.420538,0.0138931}, // fovea capitis
5752
{0.322038,0.433232,-0.378636}, // lateral anterior condyle
5853
{0.289309,0.426839,-0.372994}, // medial anterior condyle
5954
{0.328859,0.425856,-0.175012}, // anterior mid shaft
6055
{0.306293,0.487243,-0.370319}, // lateral posterior condyle
61-
{0.261891,0.47585,-0.372696}}; // medial posterior condyle
56+
{0.261891,0.47585,-0.372696} // medial posterior condyle
57+
};
58+
6259
Mode = VTK_LANDMARK_AFFINE;
6360
};
6461

@@ -68,8 +65,7 @@ Main = {
6865
Mode = VTK_LANDMARK_RIGIDBODY;
6966
};
7067

71-
AnyFunTransform3DIdentity MyTransform3 =
72-
{
68+
AnyFunTransform3DIdentity MyTransform3 = {
7369
PreTransforms = {&.MyTransform,&.MyTransform2};
7470
};
7571

‎Scaling/Downloads/lesson1c.Main.any‎

Lines changed: 33 additions & 35 deletions
Original file line numberDiff line numberDiff line change
@@ -15,55 +15,53 @@ Main = {
1515
// Todo. Add the model elements such as
1616
// segments, joints, and muscles here.
1717

18-
AnySeg SourceFemur =
19-
{
18+
AnySeg SourceFemur = {
2019
Mass = 0; Jii = {0, 0, 0};
21-
AnyDrawSurf Surface =
22-
{
20+
AnyDrawSurf Surface = {
2321
FileName = "SourceFemur.stl";
2422
RGB = {222,202,176}/256;
2523
};
26-
AnyDrawSurf SurfaceMorphed =
27-
{
24+
25+
AnyDrawSurf SurfaceMorphed = {
2826
FileName = "SourceFemur.stl";
2927
AnyFunTransform3D &ref = ..MyTransform3;
3028
};
31-
AnyDrawSurf SurfaceMorphedRBF =
32-
{
29+
30+
AnyDrawSurf SurfaceMorphedRBF = {
3331
FileName = "SourceFemur.stl";
3432
AnyFunTransform3D &ref = ..MyRBFTransform;
3533
RGB={1,0,0};
3634
};
37-
};
35+
}; // AnySeg SourceFemur
3836

39-
AnySeg TargetFemur =
40-
{
37+
AnySeg TargetFemur = {
4138
Mass = 0; Jii = {0, 0, 0};
42-
AnyDrawSurf Surface =
43-
{
39+
AnyDrawSurf Surface = {
4440
FileName = "TargetFemur.stl";
4541
RGB = {256,256,0}/256;
4642
};
47-
4843
};
4944

50-
AnyFunTransform3DLin2 MyTransform =
51-
{
45+
AnyFunTransform3DLin2 MyTransform = {
5246
//PreTransforms = {};
53-
Points0 =
54-
{{-0.00906139, 0.36453, 0.0175591}, // fovea capitis
55-
{0.0358368, -0.0100391, -0.0162062}, // lateral anterior condyle
56-
{0.0295267, -0.0112881, 0.0194889}, // medial anterior condyle
57-
{0.0282045, 0.157599, -0.0172379}, // anterior mid shaft
58-
{-0.0245689, -0.00701566, -0.0238393}, // lateral posterior condyle
59-
{-0.0320739, -0.00877602, 0.0244234}};// medial posterior condyle
60-
Points1 =
61-
{{0.289913,0.420538,0.0138931}, // fovea capitis
47+
Points0 = {
48+
{-0.00906139, 0.36453, 0.0175591}, // fovea capitis
49+
{0.0358368, -0.0100391, -0.0162062}, // lateral anterior condyle
50+
{0.0295267, -0.0112881, 0.0194889}, // medial anterior condyle
51+
{0.0282045, 0.157599, -0.0172379}, // anterior mid shaft
52+
{-0.0245689, -0.00701566, -0.0238393}, // lateral posterior condyle
53+
{-0.0320739, -0.00877602, 0.0244234} // medial posterior condyle
54+
};
55+
56+
Points1 = {
57+
{0.289913,0.420538,0.0138931}, // fovea capitis
6258
{0.322038,0.433232,-0.378636}, // lateral anterior condyle
6359
{0.289309,0.426839,-0.372994}, // medial anterior condyle
6460
{0.328859,0.425856,-0.175012}, // anterior mid shaft
6561
{0.306293,0.487243,-0.370319}, // lateral posterior condyle
66-
{0.261891,0.47585,-0.372696}}; // medial posterior condyle
62+
{0.261891,0.47585,-0.372696} // medial posterior condyle
63+
};
64+
6765
Mode = VTK_LANDMARK_AFFINE;
6866
};
6967

@@ -73,12 +71,11 @@ Main = {
7371
Mode = VTK_LANDMARK_RIGIDBODY;
7472
};
7573

76-
AnyFunTransform3DIdentity MyTransform3 =
77-
{
78-
PreTransforms = {&.MyTransform/*,&.MyTransform2*/};
74+
AnyFunTransform3DIdentity MyTransform3 = {
75+
PreTransforms = {&.MyTransform§/*,&.MyTransform2*/§};
7976
};
80-
AnyFunTransform3DRBF MyRBFTransform =
81-
{
77+
78+
AnyFunTransform3DRBF MyRBFTransform = {
8279
PreTransforms = {&.MyTransform};
8380
PolynomDegree = 1;
8481
RBFDef.Type = RBF_Triharmonic;
@@ -101,6 +98,7 @@ Main = {
10198
{-0.00084335, 0.32253400, -0.0641596}, // distal trochanteric fossa
10299
{-0.00431680, 0.35912600, 0.0036940} // femoral COR
103100
};
101+
104102
PointNames = {
105103
"Medial_Head_Point",
106104
"Anterior_LateralCondyle_Point",
@@ -112,7 +110,7 @@ Main = {
112110
"Posterior_Head_Point",
113111
"Anterior_Head_Point",
114112
"Proximal_Head_Point",
115-
"Infeior_Head_Point",
113+
"Infeior_Head_Point",
116114
"Medial_LesserTrochanter_Point",
117115
"Distal_TrochantericFossa_Point",
118116
"Proximal_Posterior_GreaterTrochanter_Point",
@@ -138,15 +136,15 @@ Main = {
138136
{ 0.3519, 0.4599,-0.0355},
139137
{ 0.3075, 0.4235, 0.0139}
140138
};
141-
BoundingBox =
142-
{
139+
140+
BoundingBox = {
143141
Type = BB_Cartesian;
144142
ScaleXYZ = {2, 2, 2};
145143
DivisionFactorXYZ = 5*{1, 1, 1};
146144
};
145+
147146
BoundingBoxOnOff = On;
148147
};
149-
150148
}; // MyModel
151149

152150
// The study: Operations to be performed on the model

0 commit comments

Comments
 (0)