chore(semver): bump - breaking changes #301
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| name: CI | |
| on: [push, pull_request] | |
| env: | |
| CARGO_TERM_COLOR: always | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Build | |
| run: cargo build --verbose | |
| - name: Run tests | |
| run: cargo test --verbose | |
| - name: Run tests (release) | |
| run: cargo test --verbose --release | |
| fmt_lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Formatting | |
| run: cargo fmt --check | |
| - name: Linting | |
| run: cargo clippy --verbose | |
| example_grep: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| ext: [bq, vbq, cbq] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: run example ${{ matrix.ext }} | |
| run: cargo run --release --example grep -- ./data/subset.${{ matrix.ext }} "ACGTACGT" | |
| example_range: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| ext: [bq, vbq, cbq] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: run example ${{ matrix.ext }} | |
| run: cargo run --release --example parallel_range -- ./data/subset.${{ matrix.ext }} 4 30 200 | |
| example_write: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| ext: [bq, vbq, cbq] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: run example (single) ${{ matrix.ext }} | |
| run: cargo run --release --example write -- ./data/subset_R1.fastq.gz -o ./output.${{ matrix.ext }} | |
| - name: run example (paired) ${{ matrix.ext }} | |
| run: cargo run --release --example write -- ./data/subset_R1.fastq.gz ./data/subset_R2.fastq.gz -o ./output.${{ matrix.ext }} | |
| example_read: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| ext: [bq, vbq, cbq] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: run example ${{ matrix.ext }} | |
| run: cargo run --release --example read -- ./data/subset.${{ matrix.ext }} |