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Archaeo-ProgrammerArchaeo-Programmer
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Adding bacon age models.
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‎.gitignore‎

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@@ -33,6 +33,6 @@ yoursession.RData
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Icon
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# Specific Files for pushing to Git
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data-raw/bacon_age_models
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data-raw/bacon_age_models/individual_cores/ignore
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vignettes/data/full_reconstruction_output_FINAL.rds
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‎data-raw/bacon_age_models/alpine_correction.csv‎

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dataset.id,site.id,site.name,depth,min,max,median,mean
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14547,9814,Alpine Pond,0,-58,-25,-42,-42
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14547,9814,Alpine Pond,10,-35,268,45,64
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14547,9814,Alpine Pond,15,-31,424,88,117
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14547,9814,Alpine Pond,20,-27,578,131,170
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14547,9814,Alpine Pond,25,3,628,188,223
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14547,9814,Alpine Pond,30,23,701,245,275
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14547,9814,Alpine Pond,35,37,797,297,328
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14547,9814,Alpine Pond,40,50,907,347,381
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14547,9814,Alpine Pond,45,94,951,405,435
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14547,9814,Alpine Pond,50,126,1002,465,488
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14547,9814,Alpine Pond,55,147,1084,518,542
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14547,9814,Alpine Pond,60,161,1190,571,595
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14517,9814,Alpine Pond,40,50,907,347,381
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14517,9814,Alpine Pond,50,126,1002,465,488
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14517,9814,Alpine Pond,61,176,1200,579,606
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14517,9814,Alpine Pond,70,250,1278,679,699
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14517,9814,Alpine Pond,80,302,1435,782,803
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14517,9814,Alpine Pond,90,408,1506,889,907
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14517,9814,Alpine Pond,100,476,1657,997,1011
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14517,9814,Alpine Pond,110,584,1738,1103,1118
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14517,9814,Alpine Pond,120,641,1872,1211,1225
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14517,9814,Alpine Pond,130,747,1936,1323,1329
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14517,9814,Alpine Pond,140,822,2070,1426,1434
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14517,9814,Alpine Pond,150,945,2159,1537,1539
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14517,9814,Alpine Pond,160,1027,2274,1645,1645
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14517,9814,Alpine Pond,170,1146,2356,1754,1753
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14517,9814,Alpine Pond,180,1227,2476,1859,1860
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14517,9814,Alpine Pond,190,1353,2538,1966,1963
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14517,9814,Alpine Pond,200,1428,2623,2069,2065
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14517,9814,Alpine Pond,210,1585,2708,2179,2172
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14517,9814,Alpine Pond,220,1675,2809,2287,2278
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14517,9814,Alpine Pond,230,1845,2882,2389,2383
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14517,9814,Alpine Pond,240,1957,2985,2495,2488
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14517,9814,Alpine Pond,250,2149,3045,2593,2591
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14517,9814,Alpine Pond,260,2266,3130,2708,2694
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14517,9814,Alpine Pond,270,2356,3279,2797,2794
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14517,9814,Alpine Pond,280,2410,3494,2878,2894
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14517,9814,Alpine Pond,290,2480,3621,2983,2997

‎data-raw/bacon_age_models/filename_key.csv‎

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FileName,site.name,site.id,dataset.id
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alpinepond,Alpine Pond,9814,14547
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bearlake,Bear Lake,10000,14951
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beefpasture,Beef Pasture,246,250
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beefpasture2005,Beef Pasture,246,25551
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cascadefen,Cascade Fen [Engineer Mountain Bog],339,347
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chihuahueñosbog,Chihuahue–os Bog,13680,20833
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columbineranchfen,Columbine Ranch Fen,486,498
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comolake,Como Lake,2957,3056
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cranelake,Crane Lake,504,517
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cumbresbog,Cumbres Bog,11617,17419
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fracaslake,Fracas Lake,9997,14944
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haylake,Hay Lake,982,1013
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headlake,Head Lake,2955,3054
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hermitlake,Hermit Lake,23930,41580
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hospitalflatmeadow,Hospital Flat Meadow,26738,46801
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hunterslake,Hunters Lake,13486,20304
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jacoblake,Jacob Lake,1127,1162
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lakeemma,Lake Emma,10061,15106
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leonoracurtin,Leonora Curtin,14632,22948
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lowdercreekbog,Lowder Creek Bog,9830,14549
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molaslake,Molas Lake,1705,1761
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molaspassbog,Molas Pass Bog,1706,1762
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montezumawell,Montezuma Well,1710,1766
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posylake,Posy Lake,1905,1970
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potatolake1,Potato Lake,1906,3560
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potatolake2,Potato Lake,1906,3561
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purplelake,Purple Lake,13683,20838
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sanagustinplains,San Agustin Plains,2260,3612
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sanluislake,San Luis Lake,9878,14650
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soldiercreekmeadow,Soldier Creek Meadow,24232,42645
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stewartbog,Stewart Bog,10191,15356
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stonemanlake,Stoneman Lake,10449,15967
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twinlakes,Twin Lakes,2785,2880

‎data-raw/bacon_age_models/individual_cores/alpinepond/alpinepond.csv‎

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labID, age, error, depth,cc
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surface,-42,6,0,0
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Beta-54270,2640,130,260,1

‎data-raw/bacon_age_models/individual_cores/alpinepond/alpinepond_16.bacon‎

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## Ran on Tue Jun 6 09:31:27 2023
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Cal 0 : ConstCal;
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Cal 1 : IntCal20 , 0 ;
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Cal 2 : Marine20 ;
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Cal 3 : SHCal20 , 0 ;
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## id. age std depth delta.R delta.STD t.a t.b cc
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Det 0 : surface , -42, 6, 0, 0, 0, 3, 4, 0;
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Det 1 : Beta-54270 , 2640, 130, 260, 0, 0, 3, 4, 1;
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Det 2 : NA , 2640, 2640000, 290, 0, 0, 3, 4, 1;
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## K MinAge MaxAge th0 th0p w.a w.b alpha beta dmin dmax seed
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Bacon 0: FixT, 16, -73, 1e+06, -37, -34, 5, 5, 1.5, 0.15, 0, 320, 967461;

‎data-raw/bacon_age_models/individual_cores/alpinepond/alpinepond_16.out‎

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‎data-raw/bacon_age_models/individual_cores/alpinepond/alpinepond_16.pdf‎

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‎data-raw/bacon_age_models/individual_cores/alpinepond/alpinepond_16_ages.txt‎

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depth min max median mean
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0 -58 -25 -42 -42
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10 -35 268 45 64
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15 -31 424 88 117
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20 -27 578 131 170
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25 3 628 188 223
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30 23 701 245 275
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35 37 797 297 328
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40 50 907 347 381
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45 94 951 405 435
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50 126 1002 465 488
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55 147 1084 518 542
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60 161 1190 571 595
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61 176 1200 579 606
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70 250 1278 679 699
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80 302 1435 782 803
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90 408 1506 889 907
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100 476 1657 997 1011
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110 584 1738 1103 1118
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120 641 1872 1211 1225
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130 747 1936 1323 1329
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140 822 2070 1426 1434
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150 945 2159 1537 1539
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160 1027 2274 1645 1645
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170 1146 2356 1754 1753
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180 1227 2476 1859 1860
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190 1353 2538 1966 1963
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200 1428 2623 2069 2065
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210 1585 2708 2179 2172
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220 1675 2809 2287 2278
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230 1845 2882 2389 2383
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240 1957 2985 2495 2488
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250 2149 3045 2593 2591
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260 2266 3130 2708 2694
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270 2356 3279 2797 2794
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280 2410 3494 2878 2894
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290 2480 3621 2983 2997

‎data-raw/bacon_age_models/individual_cores/alpinepond/alpinepond_depths.txt‎

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0
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10
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15
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20
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25
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30
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35
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40
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45
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50
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55
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60
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90
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100
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110
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130
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‎data-raw/bacon_age_models/individual_cores/alpinepond/alpinepond_settings.txt‎

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0 #d.min
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260 #d.max
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1 #d.by
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1 #depths.file
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#slump
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10 #acc.mean
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1.5 #acc.shape
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0.5 #mem.mean
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10 #mem.strength
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NA #boundary
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NA #hiatus.depths
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10000 #hiatus.max
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10000 #hiatus.max
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0 #BCAD
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1 #cc
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0 #postbomb
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IntCal20 #cc1
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Marine20 #cc2
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SHCal20 #cc3
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ConstCal #cc4
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cm #depth.unit
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0 #normal
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3 #t.a
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4 #t.b
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0 #delta.R
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0 #d.STD
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0.95 #prob
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yr#age.unit

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