Merge branch 'master' of github.com:BackofenLab/docker-galaxy-graphclust

mmiladi · mmiladi · commit 2027de16d7d7 · 2017-01-14T01:23:50.000+01:00
diff --git a/README.md b/README.md
@@ -119,6 +119,11 @@ b) encoding predicted RNA structures as graph features
 |7| Search_covariance_models | Scan full input sequences with Infernal's cmsearch to find missing cluster members |
 |8,9| Report results | Collect final clusters and create example alignments of top cluster members|
 
+### Input data:
+The input to the workflow is a set of putative RNA sequences in FASTA format. Inside the `sample_data` directory you can find examples of the input format. In this case the data is from a benchmark set based on Rfam 12.0 and additionally is optionally labeled with reference Rfam family members.
+
+### Output:
+The output contains the predicted clusters, where similar putative input RNA sequences form a cluster. Additionally overall status of the clusters and the matching of cluster elements is reported for each cluster. Please check the interactive tours and GraphClust [README](http://www.bioinf.uni-freiburg.de/Software/GraphClust/README) for more information about the reported info and files.
 
 # Contributors
 
diff --git a/sample_data/README b/sample_data/README
@@ -0,0 +1,3 @@
+Sample input data for Galaxy-GraphClust pipeline 
+
+Cliques-high and cliques-low datasets are based on Rfam 12.0 seed sequences with Human originate and different levels of similarity.

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	`1`	`+Sample input data for Galaxy-GraphClust pipeline`
	`2`	`+`
	`3`	`+Cliques-high and cliques-low datasets are based on Rfam 12.0 seed sequences with Human originate and different levels of similarity.`