add new script to Dockerfile

Author: bgruening

Dockerfile

@@ -10,11 +10,27 @@ ENV ENABLE_TTS_INSTALL True
 # Enable Conda dependency resolution
 ENV GALAXY_CONFIG_CONDA_AUTO_INSTALL=True \
     GALAXY_CONFIG_CONDA_AUTO_INIT=True \
-    GALAXY_CONFIG_USE_CACHED_DEPENDENCY_MANAGER=True    
+    GALAXY_CONFIG_USE_CACHED_DEPENDENCY_MANAGER=True
 
 # Install tools
 ADD graphclust.yml $GALAXY_ROOT/tools.yaml
 RUN install-tools $GALAXY_ROOT/tools.yaml && \
     /tool_deps/_conda/bin/conda clean --tarballs
 
 ADD tour_graphclust_wf.yaml $GALAXY_ROOT/config/plugins/tours/graphclust.wf.yaml
+
+# Data libraries
+ADD setup_data_libraries.py $GALAXY_ROOT/setup_data_libraries.py
+ADD library_data.yaml $GALAXY_ROOT/library_data.yaml
+
+# Hacky script to import workflows into Galaxy after installation. I would argue this step is redundant.
+ADD import_workflows.py $GALAXY_ROOT/import_workflows.py
+ADD GraphClust_one.ga $GALAXY_ROOT/GraphClust_one.ga
+ADD GraphClust_two.ga $GALAXY_ROOT/GraphClust_two.ga
+
+# Download training data and populate the data library
+RUN startup_lite && \
+    sleep 30 && \
+    . $GALAXY_VIRTUAL_ENV/bin/activate && \
+    python $GALAXY_ROOT/setup_data_libraries.py -i $GALAXY_ROOT/library_data.yaml && \
+    python $GALAXY_ROOT/import_workflows.py