v0.1.0

Author: innesbre

.Rbuildignore

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+^.*\.Rproj$
+^\.Rproj\.user$

.gitignore

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+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata

AgingMouseBrainCCInx.Rproj

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+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX
+
+AutoAppendNewline: Yes
+StripTrailingWhitespace: Yes
+
+BuildType: Package
+PackageUseDevtools: Yes
+PackageInstallArgs: --no-multiarch --with-keep.source

DESCRIPTION

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+Package: AgingMouseBrainCCInx
+Type: Package
+Title: Cell-cell interaction prediction from single-cell transcriptomic profiling of the aging mouse brain
+Version: 0.1.0
+Author: Methodios Ximerakis, 
+  Scott L. Lipnick,
+  Brendan T. Innes,
+  Sean K. Simmons, 
+  Xian Adiconis,
+  Danielle Dionne,
+  Brittany A. Mayweather,
+  Lan Nguyen,
+  Zachary Niziolek,
+  Ceren Ozek,
+  Vincent L. Butty,
+  Ruth Isserlin,
+  Sean M. Buchanan,
+  Stuart S. Levine,
+  Aviv Regev,
+  Gary D Bader,
+  Joshua Z. Levin,
+  Lee L. Rubin
+Maintainer: Brendan T. Innes <brendan.innes@mail.utoronto.ca>
+Description: Data package for the cell-cell interaction predictions from the 
+    paper "single-cell transcriptomic profiling of the aging mouse brain". The 
+    package contains an RData list object with both the edge list and node 
+    metadata of predicted cell-cell interactions between cell types in the mouse
+    brain, and their changes with aging.  The predictions were generated using 
+    CCInx (baderlab.github.io/CCInx), and can be viewed using the function 
+    ?ViewAgingMouseBrainCCInx.
+License: MIT + file LICENSE
+Encoding: UTF-8
+LazyData: true
+Depends: CCInx (>= 0.3.0)
+Remotes: Baderlab/CCInx

LICENSE

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+MIT License
+
+Copyright (c) 2019 Brendan T. Innes
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

NAMESPACE

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+exportPattern("^[[:alpha:]]+")

R/ViewAgingMouseBrainCCInx.R

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+#' View AgingMouseBrain cell-cell interaction predictions in the CCInx Shiny app
+#'
+#' A wrapper function to view the \code{AgingMouseBrainCCInx} dataset in the
+#' \code{CCInx} Shiny app.
+#'
+#' @return The function causes the scClustViz Shiny GUI app to open in a
+#'   seperate window.
+#'
+#' @examples
+#'   ViewAgingMouseBrainCCInx()
+#'
+#' @seealso \url{https://baderlab.github.io/CCInx} for information on
+#'   \code{scClustViz}.
+#'
+#' @export
+
+ViewAgingMouseBrainCCInx <- function() {
+  if (exists("OxYxCCInx")) {
+    ViewCCInx(OxYxCCInx)
+  } else {
+    load(system.file("data/OX_YX_CCInx_forPub.RData",package="AgingMouseBrainCCInx"))
+    ViewCCInx(OxYxCCInx)
+  }
+}

inst/data/OX_YX_CCInx_forPub.RData

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+\name{hello}
+\alias{hello}
+\title{Hello, World!}
+\usage{
+hello()
+}
+\description{
+Prints 'Hello, world!'.
+}
+\examples{
+hello()
+}