The workflow requires multiple tools to be added to the Docker container. Update the environment.yml file accordingly and make sure the container passes the continuous integration tests in your own repository before making a PR against thedev branch at BarryDigby/rtp_workshop.
Be patient while conda solves the environment. Passing multiple tools to the environment.yml file can take a while to build.
Quality Control
Miscellaneous
Alignment
The workflow requires multiple tools to be added to the Docker container. Update the
environment.ymlfile accordingly and make sure the container passes the continuous integration tests in your own repository before making a PR against thedevbranch atBarryDigby/rtp_workshop.Be patient while conda solves the environment. Passing multiple tools to the
environment.ymlfile can take a while to build.Quality Control
fastqcmultiqcqualimaprseqcsamtoolsbbtools(forbbduk.sh)Miscellaneous
gffreadbedopsbedtoolsAlignment
star=2.6.1dhisat2stringtiesalmonkallisto