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Dan-RAI
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docs updated
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python/PascalX/genescorer.py

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@@ -1773,6 +1773,10 @@ class cauchysum(genescorer):
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following math of Yaowu Liua and Jun Xie,
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doi.org/10.1080/01621459.2018.1554485
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Warning:
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The cauchy scorer is experimental !
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"""
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def __init__(self,window=50000,varcutoff=0.99,MAF=0.05,genome=None,gpu=False):

python/PascalX/genome.py

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@@ -42,7 +42,8 @@ def gene_info(self,gene):
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def get_ensembl_annotation(self,filename,genetype='protein_coding',version='GRCh38'):
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"""Gene annotation download function for ensembl.org BioMart data
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"""
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Gene annotation download function for ensembl.org BioMart data
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Args:
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filename(string): File to store downloaded annotation in
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from PascalX.genome import genome
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G = genome()
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G.get_ensemble_annotation('ensemble_hg38.txt')
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"""
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genetype = genetype.replace(" ","")

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