naming convention change to llama3

Author: VinLau

api/models/llama3.py

@@ -1,8 +1,8 @@
 from api import db
 
 
-class Llama3(db.Model):
-    __bind_key__ = "llama3_summaries"
+class Summaries(db.Model):
+    __bind_key__ = "llama3"
     __tablename__ = "summaries"
 
     gene_id: db.Mapped[str] = db.mapped_column(db.String(13), nullable=False, primary_key=True)

api/resources/llama3.py

@@ -8,7 +8,7 @@
 from markupsafe import escape
 from api.utils.bar_utils import BARUtils
 from api import db
-from api.models.llama3 import Llama3
+from api.models.llama3 import Summaries
 
 
 llama3 = Namespace("LLaMA", description="Endpoint for retreiving LLaMA3 results", path="/LLaMA")
@@ -27,7 +27,7 @@ def get(self, gene_id=""):
 
         if BARUtils.is_arabidopsis_gene_valid(gene_id):
             rows = (
-                db.session.execute(db.select(Llama3).where(Llama3.gene_id == gene_id))
+                db.session.execute(db.select(Summaries).where(Summaries.gene_id == gene_id))
                 .first()
             )
 

config/BAR_API.cfg

@@ -26,7 +26,7 @@ SQLALCHEMY_BINDS = {
     'germination': 'mysql://root:root@localhost/germination',
     'kalanchoe': 'mysql://root:root@localhost/kalanchoe',
     'klepikova': 'mysql://root:root@localhost/klepikova',
-    'llama3_summaries': 'mysql://root:root@localhost/llama3_summaries',
+    'llama3': 'mysql://root:root@localhost/llama3',
     'phelipanche' : 'mysql://root:root@localhost/phelipanche',
     'physcomitrella_db' : 'mysql://root:root@localhost/physcomitrella_db',
     'poplar_nssnp' : 'mysql://root:root@localhost/poplar_nssnp',

config/databases/llama3_summaries.sql config/databases/llama3.sqlconfig/databases/llama3_summaries.sql renamed to config/databases/llama3.sql

@@ -16,12 +16,12 @@
 /*!40111 SET @OLD_SQL_NOTES=@@SQL_NOTES, SQL_NOTES=0 */;
 
 --
--- Current Database: `llama3_summaries`
+-- Current Database: `llama3`
 --
 
-CREATE DATABASE /*!32312 IF NOT EXISTS*/ `llama3_summaries` /*!40100 DEFAULT CHARACTER SET latin1 */ /*!80016 DEFAULT ENCRYPTION='N' */;
+CREATE DATABASE /*!32312 IF NOT EXISTS*/ `llama3` /*!40100 DEFAULT CHARACTER SET latin1 */ /*!80016 DEFAULT ENCRYPTION='N' */;
 
-USE `llama3_summaries`;
+USE `llama3`;
 
 --
 -- Table structure for table `summaries`

config/init.sh

@@ -25,7 +25,7 @@ mysql -u $DB_USER -p$DB_PASS < ./config/databases/fastpheno.sql
 mysql -u $DB_USER -p$DB_PASS < ./config/databases/germination.sql
 mysql -u $DB_USER -p$DB_PASS < ./config/databases/kalanchoe.sql
 mysql -u $DB_USER -p$DB_PASS < ./config/databases/klepikova.sql
-mysql -u $DB_USER -p$DB_PASS < ./config/databases/llama3_summaries.sql
+mysql -u $DB_USER -p$DB_PASS < ./config/databases/llama3.sql
 mysql -u $DB_USER -p$DB_PASS < ./config/databases/phelipanche.sql
 mysql -u $DB_USER -p$DB_PASS < ./config/databases/physcomitrella_db.sql
 mysql -u $DB_USER -p$DB_PASS < ./config/databases/poplar_nssnp.sql