cleaned flake

Author: rmobmina

.flake8

@@ -1,16 +1,12 @@
 [flake8]
-max-line-length = 120
-extend-ignore = E203, W503, E501
+ignore = E501, E203, E121, E123, E126, W503, W504
 exclude =
     .git,
-    __pycache__,
-    docs/source/conf.py,
-    old,
-    build,
-    dist,
-    venv,
-    env,
     .venv,
-    ./venv-docs,
+    __pycache__,
+    api/Archive,
+    data,
     docs,
-    .env
+    instance,
+    output,
+    venv

tests/models/test_efp_dynamic.py

@@ -14,10 +14,10 @@
 if ROOT_DIR not in sys.path:
     sys.path.insert(0, ROOT_DIR)
 
-from sqlalchemy import inspect
-from api import app
-from api.models.efp_dynamic import SIMPLE_EFP_SAMPLE_MODELS
-from api.models.efp_schemas import SIMPLE_EFP_DATABASE_SCHEMAS
+from sqlalchemy import inspect  # noqa: E402
+from api import app  # noqa: E402
+from api.models.efp_dynamic import SIMPLE_EFP_SAMPLE_MODELS  # noqa: E402
+from api.models.efp_schemas import SIMPLE_EFP_DATABASE_SCHEMAS  # noqa: E402
 
 
 class TestDynamicModelColumns(TestCase):

tests/models/test_efp_schemas.py

@@ -17,9 +17,9 @@
 if ROOT_DIR not in sys.path:
     sys.path.insert(0, ROOT_DIR)
 
-from api import app
-from api.models.efp_schemas import SIMPLE_EFP_DATABASE_SCHEMAS, EfpSchemaBuilder
-from api.models.efp_dynamic import SIMPLE_EFP_SAMPLE_MODELS
+from api import app  # noqa: E402
+from api.models.efp_schemas import SIMPLE_EFP_DATABASE_SCHEMAS, EfpSchemaBuilder  # noqa: E402
+from api.models.efp_dynamic import SIMPLE_EFP_SAMPLE_MODELS  # noqa: E402
 
 
 class TestEfpSchemaDefinitions(TestCase):
@@ -310,7 +310,7 @@ def test_oat_has_extra_genome_columns(self):
         extra_columns = {'genome', 'genome_id', 'orthogroup', 'version'}
         self.assertTrue(
             extra_columns.issubset(column_names),
-            f"oat missing expected extra columns"
+            "oat missing expected extra columns"
         )
 
     def test_oat_has_utf8mb4_charset(self):
@@ -348,7 +348,7 @@ def test_schema_with_qa_columns_adds_three_columns(self):
 
         self.assertTrue(
             qa_columns.issubset(column_names),
-            f"QA schema missing QA columns"
+            "QA schema missing QA columns"
         )
 
     def test_build_schema_handles_extra_columns(self):