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Add support for CITATION.cff (#19)
GitHub [supports](https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/customizing-your-repository/about-citation-files) having a `CITATION.cff` file to add a citation option to your repository, added a `CITATION.cff` based off of <https://doi.org/10.1093/nar/gkae920>.
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CITATION.cff

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cff-version: 1.2.0
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title: ePlant Plant eFP
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message: >-
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A data visualization tool to display tissue expression data for Arabidopsis thaliana
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type: software
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authors:
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- given-names: Alexander
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family-names: Sullivan
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email: alexjsully.connect@outlook.com
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orcid: "https://orcid.org/0000-0002-4463-4473"
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- given-names: Michael N
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family-names: Lombardo
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- given-names: Asher
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family-names: Pasha
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orcid: "https://orcid.org/0000-0002-9315-0520"
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- given-names: Vincent
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family-names: Lau
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- given-names: Jian Yun
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family-names: Zhuang
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- given-names: Ashley
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family-names: Christendat
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- given-names: Bruno
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family-names: Pereira
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- given-names: Tianhui
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family-names: Zhao
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- given-names: Youyang
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family-names: Li
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- given-names: Rachel
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family-names: Wong
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- given-names: Faisal Z
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family-names: Qureshi
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affiliation: University of Ontario Institute of Technology
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- given-names: Nicholas J.
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family-names: Provart
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orcid: "https://orcid.org/0000-0001-5551-7232"
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email: nicholas.provart@utoronto.ca
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affiliation: University of Toronto
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identifiers:
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- type: doi
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value: 10.1093/nar/gkae920
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repository-code: "https://github.com/BioAnalyticResource/ePlant_Plant_eFP"
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url: "https://bar.utoronto.ca/"
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abstract: >-
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The Bio-Analytic Resource for Plant Biology ('the BAR', at
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https://bar.utoronto.ca) is celebrating its 20th year in
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operation in 2025. The BAR encompasses and provides
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visualization tools for large 'omics data sets from
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plants. The BAR covers data from Arabidopsis, tomato,
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wheat, barley and 29 other plant species (with data for 2
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others to be released soon). These data include nucleotide
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and protein sequence data, gene expression data,
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protein-protein and protein-DNA interactions, protein
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structures, subcellular localizations, and polymorphisms.
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The data are stored in more than 200 relational databases
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holding 186 GB of data and are presented to the
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researchers via web apps. These web apps provide data
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analysis and visualization tools. Some of the most popular
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tools are eFP ('electronic fluorescent pictograph')
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Browsers, ePlants and ThaleMine (an Arabidopsis-specific
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instance of InterMine). The BAR was designated a Global
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Core Biodata Resource in 2023. Like other GCBRs, the BAR
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has excellent operational stability, provides access
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without login requirement, and provides an API for
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researchers to be able to access BAR data
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programmatically. We present in this update a new
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overarching search tool called Gaia that permits easy
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access to all BAR data, powered by machine learning and
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artificial intelligence.
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keywords:
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- agriculture
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- bioinformatics
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- computational biology
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- data visualization
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- NLP
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- web application
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license: GPL-2.0
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commit: a7056e48e4d90f48a053ab561be30f98ee5de7c4
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version: 1.0.20
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date-released: "2024-01-15"

README.md

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The ePlant Plant eFP is a tissue expression API provided by the [Bio-Analytic Resource for Plant Biology (BAR)](https://bar.utoronto.ca/) from the University of Toronto. This tool will provide visualized tissue expression data corresponding for Arabidopsis thaliana with one of the listed [compendiums](./compendiums).
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Official publication of the [ePlant Plant eFP](https://bar.utoronto.ca) can be found at <https://doi.org/10.1093/nar/gkae920> & <https://doi.org/10.1101/2021.04.28.441805>.
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[![Maintainability](https://api.codeclimate.com/v1/badges/ed34ffac71dd5a1b2d72/maintainability)](https://codeclimate.com/github/BioAnalyticResource/ePlant_Plant_eFP/maintainability)
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[![Follow on Twitter](https://img.shields.io/twitter/follow/BAR_PlantBio?style=social)](https://twitter.com/BAR_PlantBio)
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[![GitHub repo size](https://img.shields.io/github/repo-size/BioAnalyticResource/ePlant_Plant_eFP)](https://github.com/BioAnalyticResource/ePlant_Plant_eFP)

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