dpet to idpet

Author: hamidrezaghafouri-hub

dpet/__init__.py build/lib/idpet/__init__.pydpet/__init__.py renamed to build/lib/idpet/__init__.py

@@ -3,10 +3,10 @@
 import numpy as np
 from scipy.stats import mannwhitneyu
 import mdtraj
-from dpet.ensemble import Ensemble
-from dpet.featurization.utils import get_triu_indices
-from dpet.featurization.distances import featurize_ca_dist
-from dpet.featurization.angles import featurize_a_angle, featurize_phi_psi
+from idpet.ensemble import Ensemble
+from idpet.featurization.utils import get_triu_indices
+from idpet.featurization.distances import featurize_ca_dist
+from idpet.featurization.angles import featurize_a_angle, featurize_phi_psi
 
 
 ####################################################

dpet/comparison.py build/lib/idpet/comparison.pydpet/comparison.py renamed to build/lib/idpet/comparison.py

@@ -1,5 +1,5 @@
 import requests
-from dpet.utils import logger
+from idpet.utils import logger
 
 
 class APIClient:

dpet/coord.py build/lib/idpet/coord.pydpet/coord.py renamed to build/lib/idpet/coord.py

@@ -7,7 +7,7 @@
 import numpy as np
 from sklearn.metrics import silhouette_score
 from umap import UMAP
-from dpet.utils import logger
+from idpet.utils import logger
 
 
 class DimensionalityReduction(ABC):

dpet/data/__init__.py build/lib/idpet/data/__init__.pydpet/data/__init__.py renamed to build/lib/idpet/data/__init__.py

@@ -4,12 +4,12 @@
 import mdtraj
 import numpy as np
 
-from dpet.featurization.angles import featurize_a_angle, featurize_phi_psi, featurize_tr_angle
-from dpet.featurization.distances import featurize_ca_dist
-from dpet.featurization.glob import compute_asphericity, compute_end_to_end_distances, compute_ensemble_sasa, compute_prolateness
-from dpet.featurization.ensemble_level import calc_flory_scaling_exponent
-from dpet.data.io_utils import setup_data_dir
-from dpet.utils import logger
+from idpet.featurization.angles import featurize_a_angle, featurize_phi_psi, featurize_tr_angle
+from idpet.featurization.distances import featurize_ca_dist
+from idpet.featurization.glob import compute_asphericity, compute_end_to_end_distances, compute_ensemble_sasa, compute_prolateness
+from idpet.featurization.ensemble_level import calc_flory_scaling_exponent
+from idpet.data.io_utils import setup_data_dir
+from idpet.utils import logger
 
 
 class Ensemble():

dpet/data/api_client.py build/lib/idpet/data/api_client.pydpet/data/api_client.py renamed to build/lib/idpet/data/api_client.py

@@ -7,14 +7,14 @@
 import zipfile
 import pandas as pd
 import mdtraj
-from dpet.featurization.distances import rmsd
-from dpet.data.api_client import APIClient
-from dpet.ensemble import Ensemble
-from dpet.data.io_utils import setup_data_dir, extract_tar_gz
-from dpet.dimensionality_reduction import DimensionalityReductionFactory
-from dpet.featurization.ensemble_level import ensemble_features
-from dpet.comparison import all_vs_all_comparison
-from dpet.utils import logger
+from idpet.featurization.distances import rmsd
+from idpet.data.api_client import APIClient
+from idpet.ensemble import Ensemble
+from idpet.data.io_utils import setup_data_dir, extract_tar_gz
+from idpet.dimensionality_reduction import DimensionalityReductionFactory
+from idpet.featurization.ensemble_level import ensemble_features
+from idpet.comparison import all_vs_all_comparison
+from idpet.utils import logger
 
 
 class EnsembleAnalysis: