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Add AI tools and best practices to ecosystem list
Added multiple entries for tools and best practices related to AI in life sciences, including descriptions, URLs, and recommendations. These are focused on transparency R4 standards such as PRISMA AI, STARD AI, CONSORT AI, and some other relevant reousrces eg: Biocypher
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data/ecosystem_components_list.yml

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domain: life science
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osai-recommendation: R6
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osai-explanation: A benchmarking experiment that provides standardized datasets and evaluation protocols for protein function prediction methods (R6).
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- id: pixi
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name: Pixi
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type: Reproducibility tool
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description: >-
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A cross-platform package manager and workflow tool built on Conda that
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aims to provide robust, reproducible software environments for development.
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url: https://pixi.sh/
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biotools-url: ''
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fairsharing-url: ''
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access-model: Open Source
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domain: domain-agnostic
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osai-recommendation: R5
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osai-explanation: >-
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Creates reproducible software environments through lockfiles, ensuring
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portable code and dependencies for AI/ML projects (R5).
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- id: stardai
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name: STARD-AI (Standards for Reporting of Diagnostic Accuracy Studies - AI)
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type: Best practice
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description: >-
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Reporting guideline for studies evaluating the diagnostic accuracy of an
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artificial intelligence based test.
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url: https://www.nature.com/articles/s41591-025-03953-8
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biotools-url: ''
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fairsharing-url: ''
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access-model: Free
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domain: life science
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osai-recommendation: R4
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osai-explanation: >-
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A reporting guideline checklist that promotes transparent information
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disclosure for diagnostic AI studies (R4).
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- id: decideai
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name: DECIDE-AI (DEvelopment and Clinical-validation of trustworthy AI in DEcision-support)
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type: Best practice
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description: >-
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Reporting guideline for the early-stage clinical evaluation of decision
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support systems driven by artificial intelligence, including safety and human
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factors evaluation.
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url: https://www.bmj.com/content/377/bmj-2022-070904
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biotools-url: ''
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fairsharing-url: ''
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access-model: Free
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domain: life science
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osai-recommendation: R4
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osai-explanation: >-
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A reporting guideline promoting transparent information disclosure for the
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evaluation of clinical AI decision support systems (R4).
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- id: cheersai
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name: CHEERS-AI (Consolidated Health Economic Evaluation Reporting Standards - AI)
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type: Best practice
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description: >-
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Reporting guideline for studies describing health economic evaluations to
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estimate the value for money (cost-effectiveness) of artificial intelligence
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interventions.
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url: https://www.sciencedirect.com/science/article/pii/S1098301524023660
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biotools-url: ''
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fairsharing-url: ''
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access-model: Free
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domain: life science
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osai-recommendation: R4
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osai-explanation: >-
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A reporting guideline promoting transparent information disclosure for the
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health economic evaluation of AI interventions (R4).
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- id: spiritai
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name: SPIRIT-AI (Standard Protocol Items: Recommendations for Interventional Trials - AI)
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type: Best practice
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description: >-
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Reporting guideline for protocols of clinical trials evaluating an
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intervention with an artificial intelligence component.
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url: https://www.nature.com/articles/s41591-020-1037-7
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biotools-url: ''
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fairsharing-url: ''
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access-model: Free
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domain: life science
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osai-recommendation: R4
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osai-explanation: >-
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A reporting guideline promoting transparent information disclosure for AI
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clinical trial protocols (R4).
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- id: consortai
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name: CONSORT-AI (Consolidated Standards of Reporting Trials - AI)
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type: Best practice
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description: >-
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Reporting guideline for clinical trial reports evaluating an intervention
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with an artificial intelligence component.
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url: https://www.nature.com/articles/s41591-020-1034-x
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biotools-url: ''
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fairsharing-url: ''
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access-model: Free
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domain: life science
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osai-recommendation: R4
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osai-explanation: >-
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A reporting guideline promoting transparent information disclosure for AI
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clinical trial reports (R4).
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- id: prismaai
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name: PRISMA-AI (Preferred Reporting Items for Systematic reviews and Meta-Analyses - AI)
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type: Best practice
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description: >-
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A reporting guideline for systematic reviews that use or evaluate artificial
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intelligence tools.
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url: https://www.nature.com/articles/s41591-022-02139-w
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biotools-url: ''
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fairsharing-url: ''
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access-model: Free
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domain: life science
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osai-recommendation: R4
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osai-explanation: >-
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A reporting guideline promoting transparent information disclosure for
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systematic reviews involving AI (R4).
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- id: biocypher
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name: BioCypher
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type: Tool
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description: >-
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A Python framework for building and managing FAIR biomedical knowledge graphs
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by simplifying the process of integrating and harmonizing heterogeneous data
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sources.
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url: https://biocypher.org/
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biotools-url: ''
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fairsharing-url: ''
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access-model: Open Source
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domain: life science
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osai-recommendation: ''
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osai-explanation: >-
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Facilitates the creation of standardized, AI-ready knowledge graphs,
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promoting metadata and data interoperability.
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- id: flarechallenge
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name: FLARE (Fast and Low-resource Abdominal oRgan sEgmentation) Challenge
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type: Benchmarking
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description: >-
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A MICCAI challenge for benchmarking abdominal organ segmentation methods,
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with a focus on computational efficiency and performance on low-resource
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hardware.
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url: https://flare.grand-challenge.org/
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biotools-url: ''
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fairsharing-url: ''
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access-model: Free
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domain: life science
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osai-recommendation: R6, R7
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osai-explanation: >-
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Provides standardized evaluation protocols and datasets for organ
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segmentation (R6) and promotes efficient Green AI techniques (R7).

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