|
4396 | 4396 | domain: life science |
4397 | 4397 | osai-recommendation: R6 |
4398 | 4398 | osai-explanation: A benchmarking experiment that provides standardized datasets and evaluation protocols for protein function prediction methods (R6). |
| 4399 | + |
| 4400 | +- id: pixi |
| 4401 | + name: Pixi |
| 4402 | + type: Reproducibility tool |
| 4403 | + description: >- |
| 4404 | + A cross-platform package manager and workflow tool built on Conda that |
| 4405 | + aims to provide robust, reproducible software environments for development. |
| 4406 | + url: https://pixi.sh/ |
| 4407 | + biotools-url: '' |
| 4408 | + fairsharing-url: '' |
| 4409 | + access-model: Open Source |
| 4410 | + domain: domain-agnostic |
| 4411 | + osai-recommendation: R5 |
| 4412 | + osai-explanation: >- |
| 4413 | + Creates reproducible software environments through lockfiles, ensuring |
| 4414 | + portable code and dependencies for AI/ML projects (R5). |
| 4415 | +
|
| 4416 | +- id: stardai |
| 4417 | + name: STARD-AI (Standards for Reporting of Diagnostic Accuracy Studies - AI) |
| 4418 | + type: Best practice |
| 4419 | + description: >- |
| 4420 | + Reporting guideline for studies evaluating the diagnostic accuracy of an |
| 4421 | + artificial intelligence based test. |
| 4422 | + url: https://www.nature.com/articles/s41591-025-03953-8 |
| 4423 | + biotools-url: '' |
| 4424 | + fairsharing-url: '' |
| 4425 | + access-model: Free |
| 4426 | + domain: life science |
| 4427 | + osai-recommendation: R4 |
| 4428 | + osai-explanation: >- |
| 4429 | + A reporting guideline checklist that promotes transparent information |
| 4430 | + disclosure for diagnostic AI studies (R4). |
| 4431 | +
|
| 4432 | +- id: decideai |
| 4433 | + name: DECIDE-AI (DEvelopment and Clinical-validation of trustworthy AI in DEcision-support) |
| 4434 | + type: Best practice |
| 4435 | + description: >- |
| 4436 | + Reporting guideline for the early-stage clinical evaluation of decision |
| 4437 | + support systems driven by artificial intelligence, including safety and human |
| 4438 | + factors evaluation. |
| 4439 | + url: https://www.bmj.com/content/377/bmj-2022-070904 |
| 4440 | + biotools-url: '' |
| 4441 | + fairsharing-url: '' |
| 4442 | + access-model: Free |
| 4443 | + domain: life science |
| 4444 | + osai-recommendation: R4 |
| 4445 | + osai-explanation: >- |
| 4446 | + A reporting guideline promoting transparent information disclosure for the |
| 4447 | + evaluation of clinical AI decision support systems (R4). |
| 4448 | +
|
| 4449 | +- id: cheersai |
| 4450 | + name: CHEERS-AI (Consolidated Health Economic Evaluation Reporting Standards - AI) |
| 4451 | + type: Best practice |
| 4452 | + description: >- |
| 4453 | + Reporting guideline for studies describing health economic evaluations to |
| 4454 | + estimate the value for money (cost-effectiveness) of artificial intelligence |
| 4455 | + interventions. |
| 4456 | + url: https://www.sciencedirect.com/science/article/pii/S1098301524023660 |
| 4457 | + biotools-url: '' |
| 4458 | + fairsharing-url: '' |
| 4459 | + access-model: Free |
| 4460 | + domain: life science |
| 4461 | + osai-recommendation: R4 |
| 4462 | + osai-explanation: >- |
| 4463 | + A reporting guideline promoting transparent information disclosure for the |
| 4464 | + health economic evaluation of AI interventions (R4). |
| 4465 | +
|
| 4466 | +- id: spiritai |
| 4467 | + name: SPIRIT-AI (Standard Protocol Items: Recommendations for Interventional Trials - AI) |
| 4468 | + type: Best practice |
| 4469 | + description: >- |
| 4470 | + Reporting guideline for protocols of clinical trials evaluating an |
| 4471 | + intervention with an artificial intelligence component. |
| 4472 | + url: https://www.nature.com/articles/s41591-020-1037-7 |
| 4473 | + biotools-url: '' |
| 4474 | + fairsharing-url: '' |
| 4475 | + access-model: Free |
| 4476 | + domain: life science |
| 4477 | + osai-recommendation: R4 |
| 4478 | + osai-explanation: >- |
| 4479 | + A reporting guideline promoting transparent information disclosure for AI |
| 4480 | + clinical trial protocols (R4). |
| 4481 | +
|
| 4482 | +- id: consortai |
| 4483 | + name: CONSORT-AI (Consolidated Standards of Reporting Trials - AI) |
| 4484 | + type: Best practice |
| 4485 | + description: >- |
| 4486 | + Reporting guideline for clinical trial reports evaluating an intervention |
| 4487 | + with an artificial intelligence component. |
| 4488 | + url: https://www.nature.com/articles/s41591-020-1034-x |
| 4489 | + biotools-url: '' |
| 4490 | + fairsharing-url: '' |
| 4491 | + access-model: Free |
| 4492 | + domain: life science |
| 4493 | + osai-recommendation: R4 |
| 4494 | + osai-explanation: >- |
| 4495 | + A reporting guideline promoting transparent information disclosure for AI |
| 4496 | + clinical trial reports (R4). |
| 4497 | +
|
| 4498 | +- id: prismaai |
| 4499 | + name: PRISMA-AI (Preferred Reporting Items for Systematic reviews and Meta-Analyses - AI) |
| 4500 | + type: Best practice |
| 4501 | + description: >- |
| 4502 | + A reporting guideline for systematic reviews that use or evaluate artificial |
| 4503 | + intelligence tools. |
| 4504 | + url: https://www.nature.com/articles/s41591-022-02139-w |
| 4505 | + biotools-url: '' |
| 4506 | + fairsharing-url: '' |
| 4507 | + access-model: Free |
| 4508 | + domain: life science |
| 4509 | + osai-recommendation: R4 |
| 4510 | + osai-explanation: >- |
| 4511 | + A reporting guideline promoting transparent information disclosure for |
| 4512 | + systematic reviews involving AI (R4). |
| 4513 | +
|
| 4514 | +- id: biocypher |
| 4515 | + name: BioCypher |
| 4516 | + type: Tool |
| 4517 | + description: >- |
| 4518 | + A Python framework for building and managing FAIR biomedical knowledge graphs |
| 4519 | + by simplifying the process of integrating and harmonizing heterogeneous data |
| 4520 | + sources. |
| 4521 | + url: https://biocypher.org/ |
| 4522 | + biotools-url: '' |
| 4523 | + fairsharing-url: '' |
| 4524 | + access-model: Open Source |
| 4525 | + domain: life science |
| 4526 | + osai-recommendation: '' |
| 4527 | + osai-explanation: >- |
| 4528 | + Facilitates the creation of standardized, AI-ready knowledge graphs, |
| 4529 | + promoting metadata and data interoperability. |
| 4530 | +
|
| 4531 | +- id: flarechallenge |
| 4532 | + name: FLARE (Fast and Low-resource Abdominal oRgan sEgmentation) Challenge |
| 4533 | + type: Benchmarking |
| 4534 | + description: >- |
| 4535 | + A MICCAI challenge for benchmarking abdominal organ segmentation methods, |
| 4536 | + with a focus on computational efficiency and performance on low-resource |
| 4537 | + hardware. |
| 4538 | + url: https://flare.grand-challenge.org/ |
| 4539 | + biotools-url: '' |
| 4540 | + fairsharing-url: '' |
| 4541 | + access-model: Free |
| 4542 | + domain: life science |
| 4543 | + osai-recommendation: R6, R7 |
| 4544 | + osai-explanation: >- |
| 4545 | + Provides standardized evaluation protocols and datasets for organ |
| 4546 | + segmentation (R6) and promotes efficient Green AI techniques (R7). |
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