Dockerfile

################## BASE IMAGE ######################

FROM python:3.11-slim

################## METADATA ######################

ARG software_version=0.3.15
LABEL base_image="python:3.11-slim"
LABEL version="1"
LABEL software="pod5"
LABEL software.version="$software_version"
LABEL about.summary="The pod5 python module can be used to read and write nanopore reads stored in POD5 files"
LABEL about.home="https://github.com/nanoporetech/pod5-file-format"
LABEL about.documentation="https://pod5-file-format.readthedocs.io/en/latest/index.html"
LABEL about.license_file="https://github.com/nanoporetech/pod5-file-format/blob/master/LICENSE.md"
LABEL about.license="Mozilla Public License 2.0"
LABEL about.tags="Genomics"
LABEL extra.identifiers.biotools="pod5"
LABEL extra.binaries="pod5"

################## MAINTAINER ######################
LABEL maintainer="Eduard Perez Mendez <mail@eperezme.com>"

################## INSTALLATION ####################

WORKDIR /app

RUN apt-get update && apt-get install -y --no-install-recommends bash \
    procps \
    && pip install --upgrade pip \
    && pip install lib-pod5==0.3.15 pod5==$software_version \
    && apt-get clean && rm -rf /var/lib/apt/lists/*

################## ENTRYPOINT ######################
CMD ["bash"]