Added the CMakeLists.txt file

Author: hani-girgis

CMakeLists.txt

@@ -0,0 +1,49 @@
+cmake_minimum_required (VERSION 3.10)
+
+set(CMAKE_CXX_COMPILER g++-7)
+
+project (identity)
+
+set(CMAKE_BINARY_DIR ${CMAKE_SOURCE_DIR}/bin)
+set(EXECUTABLE_OUTPUT_PATH ${CMAKE_BINARY_DIR})
+set(LIBRARY_OUTPUT_PATH ${CMAKE_BINARY_DIR})
+
+set(SOURCES 
+${CMAKE_SOURCE_DIR}/src/Aligner.cpp			
+${CMAKE_SOURCE_DIR}/src/FastaReader.cpp		
+${CMAKE_SOURCE_DIR}/src/Mutator.cpp			
+${CMAKE_SOURCE_DIR}/src/ReaderAlignerCoordinator.cpp			
+${CMAKE_SOURCE_DIR}/src/Parameters.cpp			
+${CMAKE_SOURCE_DIR}/src/Matrix.cpp
+${CMAKE_SOURCE_DIR}/src/DataGenerator.cpp
+${CMAKE_SOURCE_DIR}/src/SynDataGenerator.cpp
+${CMAKE_SOURCE_DIR}/src/GLMClassifier.cpp
+${CMAKE_SOURCE_DIR}/src/GLMRegressor.cpp
+${CMAKE_SOURCE_DIR}/src/Normalizer.cpp
+${CMAKE_SOURCE_DIR}/src/SimConverter.cpp
+${CMAKE_SOURCE_DIR}/src/FeatureExpander.cpp
+${CMAKE_SOURCE_DIR}/src/GLM.cpp
+${CMAKE_SOURCE_DIR}/src/Node.cpp
+${CMAKE_SOURCE_DIR}/src/Evaluator.cpp
+${CMAKE_SOURCE_DIR}/src/Feature.cpp
+${CMAKE_SOURCE_DIR}/src/FeatureSquared.cpp
+${CMAKE_SOURCE_DIR}/src/FeaturePaired.cpp
+${CMAKE_SOURCE_DIR}/src/StatisticInfo.cpp
+${CMAKE_SOURCE_DIR}/src/ITransformer.cpp
+${CMAKE_SOURCE_DIR}/src/Identity.cpp
+${CMAKE_SOURCE_DIR}/src/GLMPredictor.cpp
+)
+
+set(HEADER_FILES 
+${CMAKE_SOURCE_DIR}/src/KmerHistogram.h
+${CMAKE_SOURCE_DIR}/src/Statistician.h
+${CMAKE_SOURCE_DIR}/src/BestFirst.h
+${CMAKE_SOURCE_DIR}/src/LockFreeQueue.h
+${CMAKE_SOURCE_DIR}/src/AlignerParallel.h
+)
+
+set (CMAKE_CXX_STANDARD 17)
+set (CMAKE_CXX_FLAGS " -O3 -ffast-math -fopenmp -fmessage-length=0")
+
+add_executable(identity ${CMAKE_SOURCE_DIR}/src/Identity.cpp ${SOURCES} ${HEADER_FILES})
+