updated to new dynamic_print panoptica branch

Author: Hendrik-code

panoptica/example_spine_matched_instance.ipynb

@@ -16,7 +16,7 @@
     },
     {
       "cell_type": "code",
-      "execution_count": 7,
+      "execution_count": 1,
       "metadata": {},
       "outputs": [
         {
@@ -54,7 +54,7 @@
     },
     {
       "cell_type": "code",
-      "execution_count": 8,
+      "execution_count": 2,
       "metadata": {},
       "outputs": [],
       "source": [
@@ -84,7 +84,7 @@
     },
     {
       "cell_type": "code",
-      "execution_count": 9,
+      "execution_count": 3,
       "metadata": {},
       "outputs": [
         {
@@ -96,7 +96,7 @@
               "        106, 107, 108, 202, 203, 204, 205, 206, 207, 208], dtype=uint8))"
             ]
           },
-          "execution_count": 9,
+          "execution_count": 3,
           "metadata": {},
           "output_type": "execute_result"
         }
@@ -118,7 +118,7 @@
     },
     {
       "cell_type": "code",
-      "execution_count": 10,
+      "execution_count": 4,
       "metadata": {},
       "outputs": [
         {
@@ -192,7 +192,7 @@
           "text": [
             "Panoptic: Start Evaluation\n",
             "-- Got MatchedInstancePair, will evaluate instances\n",
-            "-- evaluate took 2.3251700401306152 seconds to execute.\n"
+            "-- evaluate took 2.0301928520202637 seconds to execute.\n"
           ]
         }
       ],
@@ -218,21 +218,27 @@
     },
     {
       "cell_type": "code",
-      "execution_count": 11,
+      "execution_count": 5,
       "metadata": {},
       "outputs": [
         {
           "name": "stdout",
           "output_type": "stream",
           "text": [
+            "\n",
+            "+++ MATCHING +++\n",
             "Number of instances in reference (num_ref_instances): 22\n",
             "Number of instances in prediction (num_pred_instances): 22\n",
             "True Positives (tp): 22\n",
             "False Positives (fp): 0\n",
             "False Negatives (fn): 0\n",
-            "Recognition Quality (rq): 1.0\n",
+            "Recognition Quality / F1-Score (rq): 1.0\n",
+            "\n",
+            "+++ GLOBAL +++\n",
             "Global Binary Dice (global_bin_dsc): 0.9744370224078394\n",
             "Global Binary Centerline Dice (global_bin_cldsc): 0.9637064011802574\n",
+            "\n",
+            "+++ INSTANCE +++\n",
             "Segmentation Quality IoU (sq): 0.8328184295330796 +- 0.15186064004517466\n",
             "Panoptic Quality IoU (pq): 0.8328184295330796\n",
             "Segmentation Quality Dsc (sq_dsc): 0.900292616009954 +- 0.10253566174957332\n",
@@ -249,7 +255,7 @@
     },
     {
       "cell_type": "code",
-      "execution_count": 12,
+      "execution_count": 6,
       "metadata": {},
       "outputs": [
         {
@@ -273,7 +279,7 @@
     },
     {
       "cell_type": "code",
-      "execution_count": 13,
+      "execution_count": 7,
       "metadata": {},
       "outputs": [
         {

panoptica/example_spine_semantic.ipynb

@@ -180,7 +180,7 @@
       "-- Got SemanticPair, will approximate instances\n",
       "-- Got UnmatchedInstancePair, will match instances\n",
       "-- Got MatchedInstancePair, will evaluate instances\n",
-      "-- evaluate took 6.207059383392334 seconds to execute.\n"
+      "-- evaluate took 4.104548931121826 seconds to execute.\n"
      ]
     }
    ],
@@ -213,14 +213,20 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
+      "\n",
+      "+++ MATCHING +++\n",
       "Number of instances in reference (num_ref_instances): 87\n",
       "Number of instances in prediction (num_pred_instances): 89\n",
       "True Positives (tp): 73\n",
       "False Positives (fp): 16\n",
       "False Negatives (fn): 14\n",
-      "Recognition Quality (rq): 0.8295454545454546\n",
+      "Recognition Quality / F1-Score (rq): 0.8295454545454546\n",
+      "\n",
+      "+++ GLOBAL +++\n",
       "Global Binary Dice (global_bin_dsc): 0.9731641527805414\n",
       "Global Binary Centerline Dice (global_bin_cldsc): 0.9623567366028574\n",
+      "\n",
+      "+++ INSTANCE +++\n",
       "Segmentation Quality IoU (sq): 0.7940127477906024 +- 0.11547745015679488\n",
       "Panoptic Quality IoU (pq): 0.6586696657808406\n",
       "Segmentation Quality Dsc (sq_dsc): 0.8802182546605446 +- 0.07728416427007168\n",

panoptica/example_spine_unmatched_instance.ipynb

@@ -54,7 +54,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -83,7 +83,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -117,7 +117,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -216,7 +216,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -247,7 +247,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -271,7 +271,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {