Merge pull request #10 from BrainLesion/fix/broken-images-in-notebooks

Fix/broken images in notebooks

Author: MarcelRosier

panoptica/example_spine_matched_instance.ipynb

@@ -23,7 +23,7 @@
           "name": "stdout",
           "output_type": "stream",
           "text": [
-            "Requirement already satisfied: panoptica in /Users/marcelrosier/opt/anaconda3/envs/brainles/lib/python3.10/site-packages (from -r requirements.txt (line 1)) (0.5.19.post2.dev0+dd3ef62)\n",
+            "Requirement already satisfied: panoptica in /Users/marcelrosier/opt/anaconda3/envs/brainles/lib/python3.10/site-packages (from -r requirements.txt (line 1)) (0.5.20)\n",
             "Requirement already satisfied: auxiliary in /Users/marcelrosier/opt/anaconda3/envs/brainles/lib/python3.10/site-packages (from -r requirements.txt (line 2)) (0.0.38)\n",
             "Requirement already satisfied: rich in /Users/marcelrosier/opt/anaconda3/envs/brainles/lib/python3.10/site-packages (from -r requirements.txt (line 3)) (13.6.0)\n",
             "Requirement already satisfied: numpy in /Users/marcelrosier/opt/anaconda3/envs/brainles/lib/python3.10/site-packages (from -r requirements.txt (line 4)) (1.25.2)\n",
@@ -79,7 +79,7 @@
         "To demonstrate we use a reference and predicition of spine a segmentation with matched instances.\n",
         "\n",
         "\n",
-        "<img src=\"https://github.com/BrainLesion/panoptica/blob/main/examples/figures/matched_instance.png?raw=true\" alt=\"matched_instance_figure\" height=\"300\"/>\n"
+        "![matched_figure](figures/matched_instance.png)"
       ]
     },
     {
@@ -192,7 +192,7 @@
           "text": [
             "Panoptic: Start Evaluation\n",
             "-- Got MatchedInstancePair, will evaluate instances\n",
-            "-- evaluate took 1.9782342910766602 seconds to execute.\n"
+            "-- evaluate took 1.7750227451324463 seconds to execute.\n"
           ]
         }
       ],