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Update preprocessing_tutorial.ipynb
Add comment: > Import all 3 Registrators > set ANTs as default
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preprocessing/preprocessing_tutorial.ipynb

Lines changed: 6 additions & 2 deletions
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@@ -228,7 +228,11 @@
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"from brainles_preprocessing.brain_extraction import HDBetExtractor\n",
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"from brainles_preprocessing.modality import Modality\n",
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"from brainles_preprocessing.preprocessor import Preprocessor\n",
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"from brainles_preprocessing.registration import NiftyRegRegistrator\n",
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"from brainles_preprocessing.registration import ("
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" ANTsRegistrator #default",
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" NiftyRegRegistrator #support Linux",
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" eRegRegistrator #experimental",
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" )",
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"\n",
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"\n",
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"def preprocess_exam_in_brats_style(inputDir: str) -> None:\n",
@@ -319,7 +323,7 @@
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" preprocessor = Preprocessor(\n",
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" center_modality=center,\n",
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" moving_modalities=moving_modalities,\n",
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" registrator=NiftyRegRegistrator(),\n",
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" registrator=ANTsRegistrator(),\n",
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" brain_extractor=HDBetExtractor(),\n",
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" # optional: we provide a temporary directory as a sandbox for the preprocessin\n",
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" temp_folder=\"temporary_directory\",\n",

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