Merge pull request #50 from BrainLesion/evamariie-patch-1

Update preprocessing_tutorial.ipynb

Author: MarcelRosier

preprocessing/preprocessing_tutorial.ipynb

@@ -228,7 +228,13 @@
     "from brainles_preprocessing.brain_extraction import HDBetExtractor\n",
     "from brainles_preprocessing.modality import Modality\n",
     "from brainles_preprocessing.preprocessor import Preprocessor\n",
-    "from brainles_preprocessing.registration import NiftyRegRegistrator\n",
+    "from brainles_preprocessing.registration import (\n",
+    "    ANTsRegistrator,\n",
+    "    NiftyRegRegistrator,\n",
+    "    eRegRegistrator,\n",
+    ")\n",
+    "\n",
+    "# ANTSRegistrator (default), NiftyRegRegistrator (Linux), eRegRegistrator (experimental)\n",
     "\n",
     "\n",
     "def preprocess_exam_in_brats_style(inputDir: str) -> None:\n",
@@ -319,7 +325,7 @@
     "        preprocessor = Preprocessor(\n",
     "            center_modality=center,\n",
     "            moving_modalities=moving_modalities,\n",
-    "            registrator=NiftyRegRegistrator(),\n",
+    "            registrator=ANTsRegistrator(),\n",
     "            brain_extractor=HDBetExtractor(),\n",
     "            # optional: we provide a temporary directory as a sandbox for the preprocessin\n",
     "            temp_folder=\"temporary_directory\",\n",