Skip to content

Commit 5ead40a

Browse files
committed
shorter
Signed-off-by: neuronflow <florian.kofler@tum.de>
1 parent 395fc8d commit 5ead40a

1 file changed

Lines changed: 17 additions & 54 deletions

File tree

AURORA/tutorial.ipynb

Lines changed: 17 additions & 54 deletions
Original file line numberDiff line numberDiff line change
@@ -16,49 +16,38 @@
1616
},
1717
{
1818
"cell_type": "code",
19-
"execution_count": 1,
19+
"execution_count": 13,
2020
"metadata": {},
2121
"outputs": [
2222
{
2323
"name": "stdout",
2424
"output_type": "stream",
2525
"text": [
26-
"Collecting brainles_aurora\n",
27-
" Downloading brainles_aurora-0.1.2-py3-none-any.whl.metadata (4.3 kB)\n",
26+
"Requirement already satisfied: brainles_aurora in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (0.1.2)\n",
2827
"Requirement already satisfied: matplotlib in /home/florian/.local/lib/python3.10/site-packages (3.3.1)\n",
2928
"Requirement already satisfied: PyGithub<2.0,>=1.57 in /home/florian/.local/lib/python3.10/site-packages (from brainles_aurora) (1.57)\n",
30-
"Collecting auxiliary<0.0.41,>=0.0.40 (from brainles_aurora)\n",
31-
" Using cached auxiliary-0.0.40-py3-none-any.whl.metadata (1.2 kB)\n",
29+
"Requirement already satisfied: auxiliary<0.0.41,>=0.0.40 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from brainles_aurora) (0.0.40)\n",
3230
"Requirement already satisfied: monai>=1.2.0 in /home/florian/.local/lib/python3.10/site-packages (from brainles_aurora) (1.2.0)\n",
33-
"Collecting nibabel>=4.0.2 (from brainles_aurora)\n",
34-
" Using cached nibabel-5.2.0-py3-none-any.whl.metadata (8.8 kB)\n",
31+
"Requirement already satisfied: nibabel>=4.0.2 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from brainles_aurora) (5.2.0)\n",
3532
"Requirement already satisfied: numpy>=1.23.0 in /home/florian/.local/lib/python3.10/site-packages (from brainles_aurora) (1.26.2)\n",
36-
"Collecting path<17.0.0,>=16.2.0 (from brainles_aurora)\n",
37-
" Using cached path-16.9.0-py3-none-any.whl.metadata (6.7 kB)\n",
33+
"Requirement already satisfied: path<17.0.0,>=16.2.0 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from brainles_aurora) (16.9.0)\n",
3834
"Requirement already satisfied: torch>=2.1.0 in /home/florian/.local/lib/python3.10/site-packages (from brainles_aurora) (2.1.2)\n",
39-
"Collecting tqdm<5.0.0,>=4.64.1 (from brainles_aurora)\n",
40-
" Using cached tqdm-4.66.1-py3-none-any.whl.metadata (57 kB)\n",
41-
"Collecting certifi>=2020.06.20 (from matplotlib)\n",
42-
" Downloading certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)\n",
35+
"Requirement already satisfied: tqdm<5.0.0,>=4.64.1 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from brainles_aurora) (4.66.1)\n",
36+
"Requirement already satisfied: certifi>=2020.06.20 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from matplotlib) (2024.2.2)\n",
4337
"Requirement already satisfied: cycler>=0.10 in /home/florian/.local/lib/python3.10/site-packages (from matplotlib) (0.12.1)\n",
4438
"Requirement already satisfied: kiwisolver>=1.0.1 in /home/florian/.local/lib/python3.10/site-packages (from matplotlib) (1.4.5)\n",
45-
"Collecting pillow>=6.2.0 (from matplotlib)\n",
46-
" Using cached pillow-10.2.0-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (9.7 kB)\n",
47-
"Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.3 (from matplotlib)\n",
48-
" Using cached pyparsing-3.1.1-py3-none-any.whl.metadata (5.1 kB)\n",
39+
"Requirement already satisfied: pillow>=6.2.0 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from matplotlib) (10.2.0)\n",
40+
"Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.3 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from matplotlib) (3.1.1)\n",
4941
"Requirement already satisfied: python-dateutil>=2.1 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from matplotlib) (2.8.2)\n",
5042
"Requirement already satisfied: pathlib>=1.0 in /home/florian/.local/lib/python3.10/site-packages (from auxiliary<0.0.41,>=0.0.40->brainles_aurora) (1.0.1)\n",
5143
"Requirement already satisfied: tifffile>=2023.8.25 in /home/florian/.local/lib/python3.10/site-packages (from auxiliary<0.0.41,>=0.0.40->brainles_aurora) (2023.12.9)\n",
5244
"Requirement already satisfied: packaging>=17 in /home/florian/.local/lib/python3.10/site-packages (from nibabel>=4.0.2->brainles_aurora) (23.2)\n",
5345
"Requirement already satisfied: deprecated in /home/florian/.local/lib/python3.10/site-packages (from PyGithub<2.0,>=1.57->brainles_aurora) (1.2.14)\n",
5446
"Requirement already satisfied: pyjwt>=2.4.0 in /home/florian/.local/lib/python3.10/site-packages (from PyGithub<2.0,>=1.57->brainles_aurora) (2.8.0)\n",
55-
"Collecting pynacl>=1.4.0 (from PyGithub<2.0,>=1.57->brainles_aurora)\n",
56-
" Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)\n",
57-
"Collecting requests>=2.14.0 (from PyGithub<2.0,>=1.57->brainles_aurora)\n",
58-
" Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)\n",
47+
"Requirement already satisfied: pynacl>=1.4.0 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from PyGithub<2.0,>=1.57->brainles_aurora) (1.5.0)\n",
48+
"Requirement already satisfied: requests>=2.14.0 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from PyGithub<2.0,>=1.57->brainles_aurora) (2.31.0)\n",
5949
"Requirement already satisfied: six>=1.5 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from python-dateutil>=2.1->matplotlib) (1.16.0)\n",
60-
"Collecting filelock (from torch>=2.1.0->brainles_aurora)\n",
61-
" Using cached filelock-3.13.1-py3-none-any.whl.metadata (2.8 kB)\n",
50+
"Requirement already satisfied: filelock in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from torch>=2.1.0->brainles_aurora) (3.13.1)\n",
6251
"Requirement already satisfied: typing-extensions in /home/florian/.local/lib/python3.10/site-packages (from torch>=2.1.0->brainles_aurora) (4.8.0)\n",
6352
"Requirement already satisfied: sympy in /home/florian/.local/lib/python3.10/site-packages (from torch>=2.1.0->brainles_aurora) (1.12)\n",
6453
"Requirement already satisfied: networkx in /home/florian/.local/lib/python3.10/site-packages (from torch>=2.1.0->brainles_aurora) (3.2.1)\n",
@@ -78,41 +67,15 @@
7867
"Requirement already satisfied: triton==2.1.0 in /home/florian/.local/lib/python3.10/site-packages (from torch>=2.1.0->brainles_aurora) (2.1.0)\n",
7968
"Requirement already satisfied: nvidia-nvjitlink-cu12 in /home/florian/.local/lib/python3.10/site-packages (from nvidia-cusolver-cu12==11.4.5.107->torch>=2.1.0->brainles_aurora) (12.3.52)\n",
8069
"Requirement already satisfied: cffi>=1.4.1 in /home/florian/.local/lib/python3.10/site-packages (from pynacl>=1.4.0->PyGithub<2.0,>=1.57->brainles_aurora) (1.16.0)\n",
81-
"Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub<2.0,>=1.57->brainles_aurora)\n",
82-
" Using cached charset_normalizer-3.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)\n",
83-
"Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub<2.0,>=1.57->brainles_aurora)\n",
84-
" Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB)\n",
85-
"Collecting urllib3<3,>=1.21.1 (from requests>=2.14.0->PyGithub<2.0,>=1.57->brainles_aurora)\n",
86-
" Downloading urllib3-2.2.0-py3-none-any.whl.metadata (6.4 kB)\n",
70+
"Requirement already satisfied: charset-normalizer<4,>=2 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from requests>=2.14.0->PyGithub<2.0,>=1.57->brainles_aurora) (3.3.2)\n",
71+
"Requirement already satisfied: idna<4,>=2.5 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from requests>=2.14.0->PyGithub<2.0,>=1.57->brainles_aurora) (3.6)\n",
72+
"Requirement already satisfied: urllib3<3,>=1.21.1 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from requests>=2.14.0->PyGithub<2.0,>=1.57->brainles_aurora) (2.2.0)\n",
8773
"Requirement already satisfied: wrapt<2,>=1.10 in /home/florian/.local/lib/python3.10/site-packages (from deprecated->PyGithub<2.0,>=1.57->brainles_aurora) (1.15.0)\n",
8874
"Requirement already satisfied: MarkupSafe>=2.0 in /home/florian/.local/lib/python3.10/site-packages (from jinja2->torch>=2.1.0->brainles_aurora) (2.1.3)\n",
8975
"Requirement already satisfied: mpmath>=0.19 in /home/florian/.local/lib/python3.10/site-packages (from sympy->torch>=2.1.0->brainles_aurora) (1.3.0)\n",
9076
"Requirement already satisfied: pycparser in /home/florian/.local/lib/python3.10/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub<2.0,>=1.57->brainles_aurora) (2.21)\n",
91-
"Downloading brainles_aurora-0.1.2-py3-none-any.whl (25 kB)\n",
92-
"Using cached auxiliary-0.0.40-py3-none-any.whl (20 kB)\n",
93-
"Downloading certifi-2024.2.2-py3-none-any.whl (163 kB)\n",
94-
"\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m163.8/163.8 kB\u001b[0m \u001b[31m7.2 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n",
95-
"\u001b[?25hUsing cached nibabel-5.2.0-py3-none-any.whl (3.3 MB)\n",
96-
"Using cached path-16.9.0-py3-none-any.whl (24 kB)\n",
97-
"Using cached pillow-10.2.0-cp310-cp310-manylinux_2_28_x86_64.whl (4.5 MB)\n",
98-
"Using cached pyparsing-3.1.1-py3-none-any.whl (103 kB)\n",
99-
"Using cached tqdm-4.66.1-py3-none-any.whl (78 kB)\n",
100-
"Using cached requests-2.31.0-py3-none-any.whl (62 kB)\n",
101-
"Using cached filelock-3.13.1-py3-none-any.whl (11 kB)\n",
102-
"Using cached charset_normalizer-3.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)\n",
103-
"Using cached idna-3.6-py3-none-any.whl (61 kB)\n",
104-
"Downloading urllib3-2.2.0-py3-none-any.whl (120 kB)\n",
105-
"\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m120.9/120.9 kB\u001b[0m \u001b[31m19.4 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n",
106-
"\u001b[?25hInstalling collected packages: urllib3, tqdm, pyparsing, pillow, path, nibabel, idna, filelock, charset-normalizer, certifi, requests, pynacl, auxiliary, brainles_aurora\n",
107-
" Attempting uninstall: nibabel\n",
108-
" Found existing installation: nibabel 3.2.1\n",
109-
" Uninstalling nibabel-3.2.1:\n",
110-
" Successfully uninstalled nibabel-3.2.1\n",
111-
"\u001b[31mERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.\n",
112-
"requests-oauthlib 1.3.1 requires oauthlib>=3.0.0, which is not installed.\n",
113-
"tensorboard 2.5.0 requires protobuf>=3.6.0, which is not installed.\n",
114-
"visdom 0.1.8.9 requires websocket-client, which is not installed.\u001b[0m\u001b[31m\n",
115-
"\u001b[0mSuccessfully installed auxiliary-0.0.40 brainles_aurora-0.1.2 certifi-2024.2.2 charset-normalizer-3.3.2 filelock-3.13.1 idna-3.6 nibabel-5.2.0 path-16.9.0 pillow-10.2.0 pynacl-1.5.0 pyparsing-3.1.1 requests-2.31.0 tqdm-4.66.1 urllib3-2.2.0\n"
77+
"The autoreload extension is already loaded. To reload it, use:\n",
78+
" %reload_ext autoreload\n"
11679
]
11780
}
11881
],

0 commit comments

Comments
 (0)