|
16 | 16 | }, |
17 | 17 | { |
18 | 18 | "cell_type": "code", |
19 | | - "execution_count": 1, |
| 19 | + "execution_count": 13, |
20 | 20 | "metadata": {}, |
21 | 21 | "outputs": [ |
22 | 22 | { |
23 | 23 | "name": "stdout", |
24 | 24 | "output_type": "stream", |
25 | 25 | "text": [ |
26 | | - "Collecting brainles_aurora\n", |
27 | | - " Downloading brainles_aurora-0.1.2-py3-none-any.whl.metadata (4.3 kB)\n", |
| 26 | + "Requirement already satisfied: brainles_aurora in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (0.1.2)\n", |
28 | 27 | "Requirement already satisfied: matplotlib in /home/florian/.local/lib/python3.10/site-packages (3.3.1)\n", |
29 | 28 | "Requirement already satisfied: PyGithub<2.0,>=1.57 in /home/florian/.local/lib/python3.10/site-packages (from brainles_aurora) (1.57)\n", |
30 | | - "Collecting auxiliary<0.0.41,>=0.0.40 (from brainles_aurora)\n", |
31 | | - " Using cached auxiliary-0.0.40-py3-none-any.whl.metadata (1.2 kB)\n", |
| 29 | + "Requirement already satisfied: auxiliary<0.0.41,>=0.0.40 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from brainles_aurora) (0.0.40)\n", |
32 | 30 | "Requirement already satisfied: monai>=1.2.0 in /home/florian/.local/lib/python3.10/site-packages (from brainles_aurora) (1.2.0)\n", |
33 | | - "Collecting nibabel>=4.0.2 (from brainles_aurora)\n", |
34 | | - " Using cached nibabel-5.2.0-py3-none-any.whl.metadata (8.8 kB)\n", |
| 31 | + "Requirement already satisfied: nibabel>=4.0.2 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from brainles_aurora) (5.2.0)\n", |
35 | 32 | "Requirement already satisfied: numpy>=1.23.0 in /home/florian/.local/lib/python3.10/site-packages (from brainles_aurora) (1.26.2)\n", |
36 | | - "Collecting path<17.0.0,>=16.2.0 (from brainles_aurora)\n", |
37 | | - " Using cached path-16.9.0-py3-none-any.whl.metadata (6.7 kB)\n", |
| 33 | + "Requirement already satisfied: path<17.0.0,>=16.2.0 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from brainles_aurora) (16.9.0)\n", |
38 | 34 | "Requirement already satisfied: torch>=2.1.0 in /home/florian/.local/lib/python3.10/site-packages (from brainles_aurora) (2.1.2)\n", |
39 | | - "Collecting tqdm<5.0.0,>=4.64.1 (from brainles_aurora)\n", |
40 | | - " Using cached tqdm-4.66.1-py3-none-any.whl.metadata (57 kB)\n", |
41 | | - "Collecting certifi>=2020.06.20 (from matplotlib)\n", |
42 | | - " Downloading certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)\n", |
| 35 | + "Requirement already satisfied: tqdm<5.0.0,>=4.64.1 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from brainles_aurora) (4.66.1)\n", |
| 36 | + "Requirement already satisfied: certifi>=2020.06.20 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from matplotlib) (2024.2.2)\n", |
43 | 37 | "Requirement already satisfied: cycler>=0.10 in /home/florian/.local/lib/python3.10/site-packages (from matplotlib) (0.12.1)\n", |
44 | 38 | "Requirement already satisfied: kiwisolver>=1.0.1 in /home/florian/.local/lib/python3.10/site-packages (from matplotlib) (1.4.5)\n", |
45 | | - "Collecting pillow>=6.2.0 (from matplotlib)\n", |
46 | | - " Using cached pillow-10.2.0-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (9.7 kB)\n", |
47 | | - "Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.3 (from matplotlib)\n", |
48 | | - " Using cached pyparsing-3.1.1-py3-none-any.whl.metadata (5.1 kB)\n", |
| 39 | + "Requirement already satisfied: pillow>=6.2.0 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from matplotlib) (10.2.0)\n", |
| 40 | + "Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.3 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from matplotlib) (3.1.1)\n", |
49 | 41 | "Requirement already satisfied: python-dateutil>=2.1 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from matplotlib) (2.8.2)\n", |
50 | 42 | "Requirement already satisfied: pathlib>=1.0 in /home/florian/.local/lib/python3.10/site-packages (from auxiliary<0.0.41,>=0.0.40->brainles_aurora) (1.0.1)\n", |
51 | 43 | "Requirement already satisfied: tifffile>=2023.8.25 in /home/florian/.local/lib/python3.10/site-packages (from auxiliary<0.0.41,>=0.0.40->brainles_aurora) (2023.12.9)\n", |
52 | 44 | "Requirement already satisfied: packaging>=17 in /home/florian/.local/lib/python3.10/site-packages (from nibabel>=4.0.2->brainles_aurora) (23.2)\n", |
53 | 45 | "Requirement already satisfied: deprecated in /home/florian/.local/lib/python3.10/site-packages (from PyGithub<2.0,>=1.57->brainles_aurora) (1.2.14)\n", |
54 | 46 | "Requirement already satisfied: pyjwt>=2.4.0 in /home/florian/.local/lib/python3.10/site-packages (from PyGithub<2.0,>=1.57->brainles_aurora) (2.8.0)\n", |
55 | | - "Collecting pynacl>=1.4.0 (from PyGithub<2.0,>=1.57->brainles_aurora)\n", |
56 | | - " Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)\n", |
57 | | - "Collecting requests>=2.14.0 (from PyGithub<2.0,>=1.57->brainles_aurora)\n", |
58 | | - " Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)\n", |
| 47 | + "Requirement already satisfied: pynacl>=1.4.0 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from PyGithub<2.0,>=1.57->brainles_aurora) (1.5.0)\n", |
| 48 | + "Requirement already satisfied: requests>=2.14.0 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from PyGithub<2.0,>=1.57->brainles_aurora) (2.31.0)\n", |
59 | 49 | "Requirement already satisfied: six>=1.5 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from python-dateutil>=2.1->matplotlib) (1.16.0)\n", |
60 | | - "Collecting filelock (from torch>=2.1.0->brainles_aurora)\n", |
61 | | - " Using cached filelock-3.13.1-py3-none-any.whl.metadata (2.8 kB)\n", |
| 50 | + "Requirement already satisfied: filelock in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from torch>=2.1.0->brainles_aurora) (3.13.1)\n", |
62 | 51 | "Requirement already satisfied: typing-extensions in /home/florian/.local/lib/python3.10/site-packages (from torch>=2.1.0->brainles_aurora) (4.8.0)\n", |
63 | 52 | "Requirement already satisfied: sympy in /home/florian/.local/lib/python3.10/site-packages (from torch>=2.1.0->brainles_aurora) (1.12)\n", |
64 | 53 | "Requirement already satisfied: networkx in /home/florian/.local/lib/python3.10/site-packages (from torch>=2.1.0->brainles_aurora) (3.2.1)\n", |
|
78 | 67 | "Requirement already satisfied: triton==2.1.0 in /home/florian/.local/lib/python3.10/site-packages (from torch>=2.1.0->brainles_aurora) (2.1.0)\n", |
79 | 68 | "Requirement already satisfied: nvidia-nvjitlink-cu12 in /home/florian/.local/lib/python3.10/site-packages (from nvidia-cusolver-cu12==11.4.5.107->torch>=2.1.0->brainles_aurora) (12.3.52)\n", |
80 | 69 | "Requirement already satisfied: cffi>=1.4.1 in /home/florian/.local/lib/python3.10/site-packages (from pynacl>=1.4.0->PyGithub<2.0,>=1.57->brainles_aurora) (1.16.0)\n", |
81 | | - "Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub<2.0,>=1.57->brainles_aurora)\n", |
82 | | - " Using cached charset_normalizer-3.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)\n", |
83 | | - "Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub<2.0,>=1.57->brainles_aurora)\n", |
84 | | - " Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB)\n", |
85 | | - "Collecting urllib3<3,>=1.21.1 (from requests>=2.14.0->PyGithub<2.0,>=1.57->brainles_aurora)\n", |
86 | | - " Downloading urllib3-2.2.0-py3-none-any.whl.metadata (6.4 kB)\n", |
| 70 | + "Requirement already satisfied: charset-normalizer<4,>=2 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from requests>=2.14.0->PyGithub<2.0,>=1.57->brainles_aurora) (3.3.2)\n", |
| 71 | + "Requirement already satisfied: idna<4,>=2.5 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from requests>=2.14.0->PyGithub<2.0,>=1.57->brainles_aurora) (3.6)\n", |
| 72 | + "Requirement already satisfied: urllib3<3,>=1.21.1 in /home/florian/miniconda3/envs/aurora_tutorial/lib/python3.10/site-packages (from requests>=2.14.0->PyGithub<2.0,>=1.57->brainles_aurora) (2.2.0)\n", |
87 | 73 | "Requirement already satisfied: wrapt<2,>=1.10 in /home/florian/.local/lib/python3.10/site-packages (from deprecated->PyGithub<2.0,>=1.57->brainles_aurora) (1.15.0)\n", |
88 | 74 | "Requirement already satisfied: MarkupSafe>=2.0 in /home/florian/.local/lib/python3.10/site-packages (from jinja2->torch>=2.1.0->brainles_aurora) (2.1.3)\n", |
89 | 75 | "Requirement already satisfied: mpmath>=0.19 in /home/florian/.local/lib/python3.10/site-packages (from sympy->torch>=2.1.0->brainles_aurora) (1.3.0)\n", |
90 | 76 | "Requirement already satisfied: pycparser in /home/florian/.local/lib/python3.10/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub<2.0,>=1.57->brainles_aurora) (2.21)\n", |
91 | | - "Downloading brainles_aurora-0.1.2-py3-none-any.whl (25 kB)\n", |
92 | | - "Using cached auxiliary-0.0.40-py3-none-any.whl (20 kB)\n", |
93 | | - "Downloading certifi-2024.2.2-py3-none-any.whl (163 kB)\n", |
94 | | - "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m163.8/163.8 kB\u001b[0m \u001b[31m7.2 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n", |
95 | | - "\u001b[?25hUsing cached nibabel-5.2.0-py3-none-any.whl (3.3 MB)\n", |
96 | | - "Using cached path-16.9.0-py3-none-any.whl (24 kB)\n", |
97 | | - "Using cached pillow-10.2.0-cp310-cp310-manylinux_2_28_x86_64.whl (4.5 MB)\n", |
98 | | - "Using cached pyparsing-3.1.1-py3-none-any.whl (103 kB)\n", |
99 | | - "Using cached tqdm-4.66.1-py3-none-any.whl (78 kB)\n", |
100 | | - "Using cached requests-2.31.0-py3-none-any.whl (62 kB)\n", |
101 | | - "Using cached filelock-3.13.1-py3-none-any.whl (11 kB)\n", |
102 | | - "Using cached charset_normalizer-3.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)\n", |
103 | | - "Using cached idna-3.6-py3-none-any.whl (61 kB)\n", |
104 | | - "Downloading urllib3-2.2.0-py3-none-any.whl (120 kB)\n", |
105 | | - "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m120.9/120.9 kB\u001b[0m \u001b[31m19.4 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n", |
106 | | - "\u001b[?25hInstalling collected packages: urllib3, tqdm, pyparsing, pillow, path, nibabel, idna, filelock, charset-normalizer, certifi, requests, pynacl, auxiliary, brainles_aurora\n", |
107 | | - " Attempting uninstall: nibabel\n", |
108 | | - " Found existing installation: nibabel 3.2.1\n", |
109 | | - " Uninstalling nibabel-3.2.1:\n", |
110 | | - " Successfully uninstalled nibabel-3.2.1\n", |
111 | | - "\u001b[31mERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.\n", |
112 | | - "requests-oauthlib 1.3.1 requires oauthlib>=3.0.0, which is not installed.\n", |
113 | | - "tensorboard 2.5.0 requires protobuf>=3.6.0, which is not installed.\n", |
114 | | - "visdom 0.1.8.9 requires websocket-client, which is not installed.\u001b[0m\u001b[31m\n", |
115 | | - "\u001b[0mSuccessfully installed auxiliary-0.0.40 brainles_aurora-0.1.2 certifi-2024.2.2 charset-normalizer-3.3.2 filelock-3.13.1 idna-3.6 nibabel-5.2.0 path-16.9.0 pillow-10.2.0 pynacl-1.5.0 pyparsing-3.1.1 requests-2.31.0 tqdm-4.66.1 urllib3-2.2.0\n" |
| 77 | + "The autoreload extension is already loaded. To reload it, use:\n", |
| 78 | + " %reload_ext autoreload\n" |
116 | 79 | ] |
117 | 80 | } |
118 | 81 | ], |
|
0 commit comments