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Package: GOeval
Title: Gene Regulatory Network Evaluation Using Gene Ontology
Version: 1.0.0
Authors@R:
person("Thomas", "Westbrook", , "westbrookt@wustl.edu", role = c("aut", "cre"),
comment = c(ORCID = "YOUR-ORCID-ID"))
Description: This package provides functions to easily run gene set enrichment
analysis on multiple subsets of a gene regulatory network as well
as permuted versions of the network using the 'WebGestaltR' package.
It also provides functions to help assess the quality of biological
information captured by the network via metrics calculated from
the enrichment results.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Suggests:
covr,
knitr,
rmarkdown,
testthat (>= 3.0.0)
Config/testthat/edition: 3
URL: https://BrentLab.github.io/GOeval/
Imports:
data.table,
gtools,
parallel,
parallelly,
stringr,
tidyr,
dplyr,
WebGestaltR,
ontologyIndex,
ggplot2
VignetteBuilder: knitr
LazyData: true