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Expand file tree Collapse file tree Original file line number Diff line number Diff line change 1+ ---
2+
3+ run1 :
4+ force_file : " .testdata/benzaldehyde/forces.frc"
5+ top_traj_file :
6+ - " .testdata/benzaldehyde/molecules.top"
7+ - " .testdata/benzaldehyde/trajectory.crd"
8+ selection_string : " all"
9+ start : 0
10+ end : 1
11+ step : 1
12+ file_format : " MDCRD"
13+ kcal_force_units : True
14+ search_type : " grid"
15+ grouping : " each"
Original file line number Diff line number Diff line change 1+ ---
2+
3+ run1 :
4+ force_file : " .testdata/benzene/forces.frc"
5+ top_traj_file :
6+ - " .testdata/benzene/molecules.top"
7+ - " .testdata/benzene/trajectory.crd"
8+ selection_string : " all"
9+ start : 0
10+ end : 1
11+ step : 1
12+ file_format : " MDCRD"
13+ kcal_force_units : True
14+ search_type : " grid"
15+ grouping : " each"
Original file line number Diff line number Diff line change 1+ ---
2+
3+ run1 :
4+ force_file : " .testdata/cyclohexane/forces.frc"
5+ top_traj_file :
6+ - " .testdata/cyclohexane/molecules.top"
7+ - " .testdata/cyclohexane/trajectory.crd"
8+ selection_string : " all"
9+ start : 0
10+ end : 1
11+ step : 1
12+ file_format : " MDCRD"
13+ kcal_force_units : True
14+ search_type : " grid"
15+ grouping : " each"
Original file line number Diff line number Diff line change 1+ ---
2+
3+ run1 :
4+ top_traj_file :
5+ - " .testdata/dna/md_A4_dna.tpr"
6+ - " .testdata/dna/md_A4_dna_xf.trr"
7+ selection_string : " all"
8+ start : 0
9+ end : 1
10+ step : 1
11+ grouping : " each"
Original file line number Diff line number Diff line change 1+ ---
2+
3+ run1 :
4+ force_file : " .testdata/ethyl-acetate/forces.frc"
5+ top_traj_file :
6+ - " .testdata/ethyl-acetate/molecules.top"
7+ - " .testdata/ethyl-acetate/trajectory.crd"
8+ selection_string : " all"
9+ start : 0
10+ end : 1
11+ step : 1
12+ file_format : " MDCRD"
13+ kcal_force_units : True
14+ search_type : " grid"
15+ grouping : " each"
Original file line number Diff line number Diff line change 1+ ---
2+
3+ run1 :
4+ force_file : " .testdata/methane/forces.frc"
5+ top_traj_file :
6+ - " .testdata/methane/molecules.top"
7+ - " .testdata/methane/trajectory.crd"
8+ selection_string : " all"
9+ start : 0
10+ end : 1
11+ step : 1
12+ file_format : " MDCRD"
13+ temperature : 112.0
14+ kcal_force_units : True
15+ search_type : " grid"
16+ grouping : " each"
Original file line number Diff line number Diff line change 1+ ---
2+
3+ run1 :
4+ force_file : " .testdata/methanol/forces.frc"
5+ top_traj_file :
6+ - " .testdata/methanol/molecules.top"
7+ - " .testdata/methanol/trajectory.crd"
8+ selection_string : " all"
9+ start : 0
10+ end : 1
11+ step : 1
12+ file_format : " MDCRD"
13+ kcal_force_units : True
14+ search_type : " grid"
15+ grouping : " each"
Original file line number Diff line number Diff line change 1+ ---
2+
3+ run1 :
4+ force_file : " .testdata/octonol/forces.frc"
5+ top_traj_file :
6+ - " .testdata/octonol/molecules.top"
7+ - " .testdata/octonol/trajectory.crd"
8+ selection_string : " all"
9+ start : 0
10+ end : 1
11+ step : 1
12+ file_format : " MDCRD"
13+ kcal_force_units : True
14+ search_type : " grid"
15+ grouping : " each"
Original file line number Diff line number Diff line change 1+ ---
2+
3+ run1 :
4+ force_file : " .testdata/water/forces.frc"
5+ top_traj_file :
6+ - " .testdata/water/molecules.top"
7+ - " .testdata/water/trajectory.crd"
8+ selection_string : " all"
9+ start : 0
10+ step : 1
11+ end : 1
12+ file_format : " MDCRD"
13+ kcal_force_units : True
14+ search_type : " grid"
15+ grouping : " each"
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