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WilliamKMLaiWilliamKMLai
authored
Merge pull request #16 from CEGRcode/datasets
Add ecoli reference files for EpitopeID
2 parents c8414f1 + 032a449 commit 0feb1b6

27 files changed

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‎.gitignore‎

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@@ -5,6 +5,11 @@ EpitopeID/sacCer3_EpiID/FASTA_genome/genome.fa.ann
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EpitopeID/sacCer3_EpiID/FASTA_genome/genome.fa.bwt
66
EpitopeID/sacCer3_EpiID/FASTA_genome/genome.fa.pac
77
EpitopeID/sacCer3_EpiID/FASTA_genome/genome.fa.sa
8+
EpitopeID/ecoli_EpiID/FASTA_genome/genome.fa.amb
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EpitopeID/ecoli_EpiID/FASTA_genome/genome.fa.ann
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EpitopeID/ecoli_EpiID/FASTA_genome/genome.fa.bwt
11+
EpitopeID/ecoli_EpiID/FASTA_genome/genome.fa.pac
12+
EpitopeID/ecoli_EpiID/FASTA_genome/genome.fa.sa
813
EpitopeID/hg19_EpiID/FASTA_genome/genome.fa
914
EpitopeID/hg19_EpiID/FASTA_genome/genome.fa.amb
1015
EpitopeID/hg19_EpiID/FASTA_genome/genome.fa.ann

‎EpitopeID/ecoli_EpiID/FASTA_genome/genome.fa‎

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‎EpitopeID/ecoli_EpiID/FASTA_genome/genome.fa.fai‎

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W3110 4646332 7 70 71

‎EpitopeID/ecoli_EpiID/FASTA_tag/ALL_TAG.fa‎

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>AID
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CCAAAAGATCCGGCGAAGCCACCCGCGAAGGCGCAGGTTGTTGGTTGGCCACCTGTAAGGTCATATCGTAAGAATGTTATGGTTAGCTGTCAGAAGAGCAGTGGCGGTCCAGAGGCCGCTGCATTTGTGAAA
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>CBP
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AAGAGAAGGTGGAAGAAGAACTTCATCGCCGTGAGCGCGGCAAACCGTTTCAAGAAGATAAGTAGCAGTGGAGCATTA
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>Extended-Tap
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GGTCGACGGATCCCCGGGTTAATTAATCCATGGAAGAGAAGATGGAAAAAGAATTTCATAGCCGTCTCAGCAGCCAACCGCTTTAAGAAAATCTCATCCTCCGGGGCACTTGATTATGATATTCCAACTACTGCTAGCGAGAATTTGTATTTTCAGGGAGAATTCGGCCTTGCGCAACACGATGAAGCCGTGGACAACAAATTCAACAAAGAACAACAAAACGCGTTCTATGAGATCTTACATTTACCTAACTTAAACGAAGAACAACGAAACGCCTTCATCCAAAGTTTAAAAGATGACCCAAGCCAAAGCGCTAACCTTTTAGCAGAAGCTAAAAAGCTAAATGATGCTCAGGCGCCGAAAGTAGACAACAAATTCAACAAAGAACAACAAAACGCGTTCTATGAGATCTTACATTTACCTAACTTAAACGAAGAACAACGAAACGCCTTCATCCAAAGTTTAAAAGATGACCCAAGCCAAAGCGCTAACCTTTTAGCAGAAGCTAAAAAGCTAAATGATGCTCAGGCGCCGAAAGTAGACGCGAATCATCAGTGAGGCGCGCCACTTCTAAATAAGCGAATTTCTTATGATTTATGATTTTTATTATTAAATAAGTTATAAAAAAAATAAGTGTATACAAATTTTAAAGTGACTCTTAGGTTTTAAAACGAAAATTCTTATTCTTGAGTAACTCTTTCCTGTAGGTCAGGTTGCTTTCTCAGGTATAGTATGAGGTCGCTCTTATTGACCACACCTCTACCGGCAGATCCGCTAGGGATAACAGGGTAATATAGATCTGTTTAGCTTGCCTCGTCCCCGCCGGGTCACCCGGCCAGCGACATGGAGGCCCAGAATACCCTCCTTGACAGTCTTGACGTGCGCAGCTCAGGGGCATGATGTGACTGTCGCCCGTACATTTAGCCCATACATCCCCATGTATAATCATTTGCATCCATACATTTTGATGGCCGCACGGCGCGAAGCAAAAATTACGGCTCCTCGCTGCAGACCTGCGAGCAGGGAAACGCTCCCCTCACAGACGCGTTGAATTGTCCCCACGCCGCGCCCCTGTAGAGAAATATAAAAGGTTAGGATTTGCCACTGAGGTTCTTCTTTCATATACTTCCTTTTAAAATCTTGCTAGGATACAGTTCTCACATCACATCCGAACATAAACAACCATGGGTAGGAGGGCTTTTGTAGAAAGAAATACGAACGAAACGAAAATCAGCGTTGCCATCGCTTTGGACAAAGCTCCCTTACCTGAAGAGTCGAATTTTATTGATGAACTTATAACTTCCAAGCATGCAAACCAAAAGGGAGAACAAGTAATCCAAGTAGACACGGGAATTGGATTCTTGGATCACATGTATCATGCACTGGCTAAACATGCAGGCTGGAGCTTACGACTTTACTCAAGAGGTGATTTAATCATCGATGATCATCACACTGCAGAAGATACTGCTATTGCACTTGGTATTGCATTCAAGCAGGCTATGGGTAACTTTGCCGGCGTTAAAAGATTTGGACATGCTTATTGTCCACTTGACGAAGCTCTTTCTAGAAGCGTAGTTGACTTGTCGGGACGGCCCTATGCTGTTATCGATTTGGGATTAAAGCGTGAAAAGGTTGGGGAATTGTCCTGTGAAATGATCCCTCACTTACTATATTCCTTTTCGGTAGCAGCTGGAATTACTTTGCATGTTACCTGCTTATATGGTAGTAATGACCATCATCGTGCTGAAAGCGCTTTTAAATCTCTGGCTGTTGCCATGCGCGCGGCTACTAGTCTTACTGGAAGTTCTGAAGTCCCAAGCACGAAGGGAGTGTTGTAAAGAGTACTGACAATAAAAAGATTCTTGTTTTCAAGAACTTGTCATTTGTATAGTTTTTTTATATTGTAGTTGTTCTATTTTAATCAAATGTTAGCGTGATTTATATTTTTTTTCGCCTCGACATCATCTGCCCAGATGCGAAGTTAAGTGCGCAGAAAGTAATATCATGCGTCAATCGTATGTGAATGCTGGTCGCTATACTGCTGTCGATTCGATACTAACGCCGCCATCCAGTTTAAACGAGCTCGAATTCATCGA
7+
>FLAG-3x
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AGATTACAAGGATCACGATGGCGATTACAAGGATCACGATATCGATTACAAGGATGATGATGATAAG
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>FRB
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ATATTGTGGCACGAGATGTGGCACGAAGGGCTGGAAGAGGCCTCTAGGCTATACTTTGGCGAGCGTAATGTCAAAGGGATGTTCGAGGTGCTAGAGCCCCTTCACGCGATGATGGAGAGAGGTCCACAGACTCTGAAAGAAACGAGCTTCAATCAAGCCTACGGTAGGGACTTGATGGAAGCTCAAGAGTGGTGTCGTAAGTATATGAAATCCGGGAACGTCAAAGACTTGTTACAAGCTTGGGATCTGTATTACCATGTCTTCCGTAGAATCAGCAAG
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>GFP
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GTAAAGGTGAGGAATTATTTACAGGCGTAGTACCAATCCTAGTAGAGTTAGACGGCGACGTCAATGGCCACAAATTTAGTGTCTCTGGCGAGGGTGAAGGTGATGCTACCTACGGTAAGTTAACGCTAAAATTTATATGCACTACGGGTAAATTACCAGTACCGTGGCCCACATTAGTGACAACTTTTACTTATGGAGTGCAGTGTTTTTCCCGTTACCCGGATCACATGAAAAGGCACGACTTCTTCAAATCTGCTATGCCGGAAGGGTACGTTCAAGAAAGAACTATATTTTTTAAGGACGACGGGAATTACAAGACCAGAGCTGAAGTAAAATTTGAGGGAGACACCTTGGTTAACAGAATTGAGCTAAAGGGAATAGATTTCAAAGAAGATGGGAACATCCTAGGCCATAAATTAGAGTACAACTATAATTCACACAATGTGTATATAATGGCAGATAAGCAGAAAAATGGAATTAAAGTTAACTTCAAGATTAGACACAATATCGAAGATGGGAGTGTCCAGCTAGCCGATCACTATCAACAGAATACGCCGATTGGCGATGGGCCTGTCCTTTTGCCAGATAATCACTATCTTTCTACACAATCTGCTCTGAGTAAGGACCCGAATGAGAAACGTGACCACATGGTCCTGTTGGAATTTGTAACAGCAGCGGGCATAACACACGGCATGGATGAGCTATATAAA
13+
>HA_v1
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TACCCATACGATGTTCCAGATTACGCTTACCCATACGATGTTCCAGATTACGCTTACCCATACGATGTTCCAGATTACGCT
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>HA_v2
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TATCCATATGATGTTCCAGATTATGCTTATCCATATGATGTTCCAGATTATGCTTATCCATATGATGTTCCAGATTATGCT
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>HA_v3
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GCGGCCGTTTACCCATACGATGTTCCTGACTATGCGGGCTATCCCTATGACGTCCCGGACTATGCAGGATCCTATCCATATGACGTTCCAGATTACGCTCCGGCCGCC
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>HaloTag
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AATGCAGAAATAGGGACAGGCTTTCCTTTTGATCCCCATTATGTAGAGGTACTAGGAGAACGTATGCATTACGTGGACGTGGGACCAAGAGATGGCACCCCAGTTCTTTTTTTACACGGAAACCCAACCAGTTCTTATGTCTGGAGGAACATCATCCCTCACGTTGCTCCAACTCACAGATGTATAGCGCCTGATCTGATTGGGATGGGTAAATCAGACAAACCCGACTTGGGCTACTTCTTCGATGACCACGTCAGATTTATGGACGCGTTCATTGAGGCACTTGGGTTGGAAGAAGTCGTCCTGGTAATACATGACTGGGGATCAGCCCTGGGATTTCATTGGGCTAAAAGGAATCCAGAGAGAGTAAAAGGGATTGCCTTCATGGAGTTTATCAGGCCCATACCCACCTGGGATGAGTGGCCCGAGTTTGCTAGAGAGACCTTCCAGGCTTTCAGGACTACCGATGTCGGCCGTAAATTGATTATTGACCAAAATGTTTTCATCGAGGGAACGTTGCCTATGGGCGTAGTCCGTCCCCTAACGGAGGTCGAAATGGATCATTACAGAGAACCGTTTTTGAACCCTGTAGACCGTGAGCCACTGTGGCGTTTTCCAAACGAATTACCGATAGCTGGCGAACCCGCTAATATCGTCGCCCTGGTAGAGGAATACATGGACTGGCTTCATCAAAGTCCTGTTCCCAAATTGTTATTTTGGGGTACACCAGGTGTATTAATTCCACCTGCCGAAGCCGCCAGGTTGGCAAAATCATTACCGAACTGCAAAGCTGTAGACATCGGCCCCGGTTTGAATCTGCTGCAGGAGGATAACCCGGATTTGATAGGGTCTGAAATCGCGCGTTGGTTGTCAACCCTGGAAATATCAGGC
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>MNase_v2
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CCGCCACCAGTACCAAGAAGCTGCACAAGGAGCCCGCCACCCTGATCAAGGCCATAGATGGCGATACCGTGAAGCTGATGTATAAGGGCCAGCCCATGACCTTCCGCCTGCTGCTGGTGGATACCCCCGAGACCAAGCACCCGAAAAAGGGCGTGGAAAAGTACGGACCCGAGGCCAGCGCCTTCACAAAAAAGATGGTGGAGAACGCCAAGAAAATCGAGGTGGAGTTCGATAAAGGCCAACGCACCGATAAGTATGGACGCGGTCTGGCCTACATCTACGCCGACGGCAAAATGGTGAACGAGGCCCTGGTGCGGCAGGGACTGGCCAAGGTGGCGTACGTGTACAAGCCCAACAACACCCACGAGCAGCACCTGCGCAAGAGCGAGGCTCAGGCAAAGAAGGAGAAACTGAACATCTGGAGTGAGGATAACGCCGATAGCGGCCAGT
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>Myc-3x
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GGCGAACAGAAGCTAATCAGTGAGGAGGACCTTAATGGTGAGCAGAAACTAATCTCTGAAGAGGATTTGAATGGAGAACAAAAGCTGATTTCTGAGGAGGACTTAAAC
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>ProteinA
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AAAACGGCAGCTTTAGCGCAGCACGACGAGGCTGTGGACAATAAGTTTAACAAGGAGCAGCAGAACGCATTCTACGAGATCCTTCATCTGCCTAACCTGAATGAGGAACAAAGGAACGCGTTCATTCAAAGTCTGAAGGACGACCCAAGCCAGTCAGCGAATTTGCTTGCCGAAGCAAAAAAACTGAACGACGCCCAAGCGCCCAAAGTCGATAATAAATTCAATAAGGAACAGCAGAATGCATTCTATGAGATTCTGCATCTACCGAATCTTAACGAAGAACAGAGGAACGCCTTTATCCAGTCTCTAAAGGATGATCCAAGCCAATCCGCTAACCTATTAGCTGAAGCAAAGAAGCTTAATGGAGCCCAAGCACCGAAAGTTGATGCCAACAGTGCCGGTAAATCAACT

‎EpitopeID/ecoli_EpiID/FASTA_tag/ALL_TAG.fa.amb‎

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5492 13 0

‎EpitopeID/ecoli_EpiID/FASTA_tag/ALL_TAG.fa.ann‎

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5492 13 11
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0 AID (null)
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0 132 0
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0 CBP (null)
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132 78 0
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0 Extended-Tap (null)
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210 2096 0
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0 FLAG-3x (null)
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2306 67 0
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0 FRB (null)
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2373 279 0
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0 GFP (null)
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2652 710 0
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0 HA_v1 (null)
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3362 81 0
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0 HA_v2 (null)
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3443 81 0
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0 HA_v3 (null)
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3524 108 0
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0 HaloTag (null)
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3632 891 0
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0 MNase_v2 (null)
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4523 450 0
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0 Myc-3x (null)
25+
4973 108 0
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0 ProteinA (null)
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5081 411 0

‎EpitopeID/ecoli_EpiID/FASTA_tag/ALL_TAG.fa.bwt‎

5.44 KB
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‎EpitopeID/ecoli_EpiID/FASTA_tag/ALL_TAG.fa.pac‎

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‎EpitopeID/ecoli_EpiID/FASTA_tag/ALL_TAG.fa.sa‎

2.73 KB
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‎EpitopeID/ecoli_EpiID/FASTA_tag/Tag_DB/AID.fa‎

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>AID
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CCAAAAGATCCGGCGAAGCCACCCGCGAAGGCGCAGGTTGTTGGTTGGCCACCTGTAAGGTCATATCGTAAGAATGTTATGGTTAGCTGTCAGAAGAGCAGTGGCGGTCCAGAGGCCGCTGCATTTGTGAAA

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