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add new hg19 EpitopeID ref db (v2) - more epitopes
create a second version 2 of the database with an expanded set of epitope sequences
1 parent 19aaf7a commit 97e0b79

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‎.gitignore‎

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EpitopeID/ecoli_EpiID/FASTA_genome/genome.fa.*
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EpitopeID/sacCer3_EpiID/FASTA_genome/genome.fa*
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EpitopeID/hg19_EpiID/FASTA_genome/genome.fa*
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EpitopeID/hg19_EpiID_v2/FASTA_genome/genome.fa*
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StrainID/hg38_VCF
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StrainID/hg38_ENCODE
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StrainID/hg38_DepMap

‎EpitopeID/hg19_EpiID_v2/FASTA_genome/README.txt‎

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genome.fa goes here

‎EpitopeID/hg19_EpiID_v2/FASTA_tag/ALL_TAG.fa‎

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>3xFLAG
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gggagcggaggaggttccggtggaggtggttctggagattacaaggatgacgacgataagggcgattacaaggatgacgacgataagg
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gagattacaaggatgacgacgataaggtttcaggaagcggagctactaacttcagcctgctgaagcaggctggagacgtggaggagaac
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cctggacctggatcgtttcgcatgattgaacaagatggattgcacgcaggttctccggccgcttgggtggagaggctattcggctatgactggg
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cacaacagacaatcggctgctctgatgccgccgtgttccggctgtcagcgcaggggcgcccggttctttttgtcaagaccgacctgtccggtg
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ccctgaatgaactgcaggacgaggcagcgcggctatcgtggctggccacgacgggcgttccttgcgcagctgtgctcgacgttgtcactga
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agcgggaagggactggctgctattgggcgaagtgccggggcaggatctcctgtcatctcaccttgctcctgccgagaaagtatccatcatgg
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ctgatgcaatgcggcggctgcatacgcttgatccggctacctgcccattcgaccaccaagcgaaacatcgcatcgagcgagcacgtactcg
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gatggaagccggtcttgtcgatcaggatgatctggacgaagagcatcaggggctcgcgccagccgaactgttcgccaggctcaaggcgcg
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catgcccgacggcgaggatctcgtcgtgacccatggcgatgcctgcttgccgaatatcatggtggaaaatggccgcttttctggattcatcgac
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tgtggccggctgggtgtggccgaccgctatcaggacatagcgttggctacccgtgatattgctgaagagcttggcggcgaatgggctgaccg
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cttcctcgtgctttacggtatcgccgctcccgattcgcagcgcatcgccttctatcgccttcttgacgagttcttctgattcgaacatc
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>FKBP12-V F36V variant of FKBP12
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atgggagtgcaggtggaaaccatctccccaggagacgggcgcaccttccccaagcgcggccagacctgcgtggtgcactacaccgggatgcttgaagatggaaagaaagttgattcctcccgggacagaaacaagccctttaagtttatgctaggcaagcaggaggtgatccgaggctgggaagaaggggttgcccagatgagtgtgggtcagagagccaaactgactatatctccagattatgcctatggtgccactgggcacccaggcatcatcccaccacatgccactctcgtcttcgatgtggagcttctaaaactggaa
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>HaloTag
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AATGCAGAAATAGGGACAGGCTTTCCTTTTGATCCCCATTATGTAGAGGTACTAGGAGAACGTATGCATTACGTGGACGTGGGACCAAGAGATGGCACCCCAGTTCTTTTTTTACACGGAAACCCAACCAGTTCTTATGTCTGGAGGAACATCATCCCTCACGTTGCTCCAACTCACAGATGTATAGCGCCTGATCTGATTGGGATGGGTAAATCAGACAAACCCGACTTGGGCTACTTCTTCGATGACCACGTCAGATTTATGGACGCGTTCATTGAGGCACTTGGGTTGGAAGAAGTCGTCCTGGTAATACATGACTGGGGATCAGCCCTGGGATTTCATTGGGCTAAAAGGAATCCAGAGAGAGTAAAAGGGATTGCCTTCATGGAGTTTATCAGGCCCATACCCACCTGGGATGAGTGGCCCGAGTTTGCTAGAGAGACCTTCCAGGCTTTCAGGACTACCGATGTCGGCCGTAAATTGATTATTGACCAAAATGTTTTCATCGAGGGAACGTTGCCTATGGGCGTAGTCCGTCCCCTAACGGAGGTCGAAATGGATCATTACAGAGAACCGTTTTTGAACCCTGTAGACCGTGAGCCACTGTGGCGTTTTCCAAACGAATTACCGATAGCTGGCGAACCCGCTAATATCGTCGCCCTGGTAGAGGAATACATGGACTGGCTTCATCAAAGTCCTGTTCCCAAATTGTTATTTTGGGGTACACCAGGTGTATTAATTCCACCTGCCGAAGCCGCCAGGTTGGCAAAATCATTACCGAACTGCAAAGCTGTAGACATCGGCCCCGGTTTGAATCTGCTGCAGGAGGATAACCCGGATTTGATAGGGTCTGAAATCGCGCGTTGGTTGTCAACCCTGGAAATATCAGGC
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>LAP-tag
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TTACTTGTACAGCTCGTCCATGCCGAGAGTGATCCCGGCGGCGGTCACGAACTCCTTAAGGACCATGTGATCGCGCTTCTCGTTGGGGTCTTTGCTCAGGGCGGACTGGGTGCTCAGGTAGTGGTTGTCGGGCAGCAGCACGGGGCCGTCGCCGATGGGGGTGTTCTGCTGGTAGTGGTCGGCGAGCTGCACGCTGCCGTCCTCGATGTTGTGGCGGATCTTGAAGTTCACCTTGATGCCGTTCTTCTGCTTGTCGGCCATGATATAGACGTTGTGGCTGTTGTAGTTGTACTCCAGCTTGTGCCCCAGGATGTTGCCGTCCTCCTTGAAGTCGATGCCCTTCAGCTCGATGCGGTTCACCAGGGTGTCGCCCTCGAACTTCACCTCGGCGCGGGTCTTGTAGTTGCCGTCGTCCTTGAAGAAGATGGTGCGCTCCTGGACGTAGCCTTCGGGCATGGCGGACTTGAAGAAGTCGTGCTGCTTCATGTGGTCGGGGTAGCGGCTGAAGCACTGCACGCCGTAGGTCAGGGTGGTCACGAGGGTGGGCCAGGGCACGGGCAGCTTGCCGGTGGTGCAGATGAACTTCAGGGTCAGCTTGCCGTAGGTGGCATCGCCCTCGCCCTCGCCGGACACGCTGAACTTGTGGCCGTTTACGTCGCCGTCCAGCTCGACCAGGATGGGCACCACCCCGGTGAACAGCTCCTCGCCTTTGCTCACCATCGAACCCGAGGGACCGCTCGACGACAGGGGCCCCTGGAACAGAACTTCCAGGCTCGACGAACCCGAGGGACCGCTCGAACCTCCACCTCCGCTGTCCATGTGCTGGCGTTCGAATTTAGCAGCAGCGGTTTCTTTGAATTTGGCGGCGCCCTGAAAATAAAGATTCTCGCTTGCAGTAGTTGGAATATCATAATC

‎EpitopeID/hg19_EpiID_v2/FASTA_tag/ALL_TAG.fa.1.bt2‎

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‎EpitopeID/hg19_EpiID_v2/FASTA_tag/ALL_TAG.fa.2.bt2‎

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‎EpitopeID/hg19_EpiID_v2/FASTA_tag/ALL_TAG.fa.3.bt2‎

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‎EpitopeID/hg19_EpiID_v2/FASTA_tag/ALL_TAG.fa.4.bt2‎

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‎EpitopeID/hg19_EpiID_v2/FASTA_tag/ALL_TAG.fa.rev.1.bt2‎

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‎EpitopeID/hg19_EpiID_v2/FASTA_tag/ALL_TAG.fa.rev.2.bt2‎

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‎EpitopeID/hg19_EpiID_v2/FASTA_tag/Tag_DB/3xFLAG.fa‎

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>3xFLAG
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gggagcggaggaggttccggtggaggtggttctggagattacaaggatgacgacgataagggcgattacaaggatgacgacgataagg
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gagattacaaggatgacgacgataaggtttcaggaagcggagctactaacttcagcctgctgaagcaggctggagacgtggaggagaac
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cctggacctggatcgtttcgcatgattgaacaagatggattgcacgcaggttctccggccgcttgggtggagaggctattcggctatgactggg
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cacaacagacaatcggctgctctgatgccgccgtgttccggctgtcagcgcaggggcgcccggttctttttgtcaagaccgacctgtccggtg
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ccctgaatgaactgcaggacgaggcagcgcggctatcgtggctggccacgacgggcgttccttgcgcagctgtgctcgacgttgtcactga
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agcgggaagggactggctgctattgggcgaagtgccggggcaggatctcctgtcatctcaccttgctcctgccgagaaagtatccatcatgg
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ctgatgcaatgcggcggctgcatacgcttgatccggctacctgcccattcgaccaccaagcgaaacatcgcatcgagcgagcacgtactcg
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gatggaagccggtcttgtcgatcaggatgatctggacgaagagcatcaggggctcgcgccagccgaactgttcgccaggctcaaggcgcg
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catgcccgacggcgaggatctcgtcgtgacccatggcgatgcctgcttgccgaatatcatggtggaaaatggccgcttttctggattcatcgac
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tgtggccggctgggtgtggccgaccgctatcaggacatagcgttggctacccgtgatattgctgaagagcttggcggcgaatgggctgaccg
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cttcctcgtgctttacggtatcgccgctcccgattcgcagcgcatcgccttctatcgccttcttgacgagttcttctgattcgaacatc

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