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owlangowlang
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Merge branch 'master' into revisions
2 parents eba2c2b + f60907b commit 9a2de36

82 files changed

Lines changed: 71021 additions & 24083 deletions

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‎.gitignore‎

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@@ -11,6 +11,11 @@ EpitopeID/sacCer3_EpiID/FASTA_genome/genome.fa.3.bt2
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EpitopeID/sacCer3_EpiID/FASTA_genome/genome.fa.4.bt2
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EpitopeID/sacCer3_EpiID/FASTA_genome/genome.fa.rev.1.bt2
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EpitopeID/sacCer3_EpiID/FASTA_genome/genome.fa.rev.2.bt2
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EpitopeID/ecoli_EpiID/FASTA_genome/genome.fa.amb
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EpitopeID/ecoli_EpiID/FASTA_genome/genome.fa.ann
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EpitopeID/ecoli_EpiID/FASTA_genome/genome.fa.bwt
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EpitopeID/ecoli_EpiID/FASTA_genome/genome.fa.pac
18+
EpitopeID/ecoli_EpiID/FASTA_genome/genome.fa.sa
1419
EpitopeID/hg19_EpiID/FASTA_genome/genome.fa
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EpitopeID/hg19_EpiID/FASTA_genome/genome.fa.amb
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EpitopeID/hg19_EpiID/FASTA_genome/genome.fa.ann

‎EpitopeID/ecoli_EpiID/FASTA_genome/genome.fa‎

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‎EpitopeID/ecoli_EpiID/FASTA_genome/genome.fa.fai‎

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W3110 4646332 7 70 71

‎EpitopeID/ecoli_EpiID/FASTA_tag/ALL_TAG.fa‎

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>AID
2+
CCAAAAGATCCGGCGAAGCCACCCGCGAAGGCGCAGGTTGTTGGTTGGCCACCTGTAAGGTCATATCGTAAGAATGTTATGGTTAGCTGTCAGAAGAGCAGTGGCGGTCCAGAGGCCGCTGCATTTGTGAAA
3+
>CBP
4+
AAGAGAAGGTGGAAGAAGAACTTCATCGCCGTGAGCGCGGCAAACCGTTTCAAGAAGATAAGTAGCAGTGGAGCATTA
5+
>Extended-Tap
6+
GGTCGACGGATCCCCGGGTTAATTAATCCATGGAAGAGAAGATGGAAAAAGAATTTCATAGCCGTCTCAGCAGCCAACCGCTTTAAGAAAATCTCATCCTCCGGGGCACTTGATTATGATATTCCAACTACTGCTAGCGAGAATTTGTATTTTCAGGGAGAATTCGGCCTTGCGCAACACGATGAAGCCGTGGACAACAAATTCAACAAAGAACAACAAAACGCGTTCTATGAGATCTTACATTTACCTAACTTAAACGAAGAACAACGAAACGCCTTCATCCAAAGTTTAAAAGATGACCCAAGCCAAAGCGCTAACCTTTTAGCAGAAGCTAAAAAGCTAAATGATGCTCAGGCGCCGAAAGTAGACAACAAATTCAACAAAGAACAACAAAACGCGTTCTATGAGATCTTACATTTACCTAACTTAAACGAAGAACAACGAAACGCCTTCATCCAAAGTTTAAAAGATGACCCAAGCCAAAGCGCTAACCTTTTAGCAGAAGCTAAAAAGCTAAATGATGCTCAGGCGCCGAAAGTAGACGCGAATCATCAGTGAGGCGCGCCACTTCTAAATAAGCGAATTTCTTATGATTTATGATTTTTATTATTAAATAAGTTATAAAAAAAATAAGTGTATACAAATTTTAAAGTGACTCTTAGGTTTTAAAACGAAAATTCTTATTCTTGAGTAACTCTTTCCTGTAGGTCAGGTTGCTTTCTCAGGTATAGTATGAGGTCGCTCTTATTGACCACACCTCTACCGGCAGATCCGCTAGGGATAACAGGGTAATATAGATCTGTTTAGCTTGCCTCGTCCCCGCCGGGTCACCCGGCCAGCGACATGGAGGCCCAGAATACCCTCCTTGACAGTCTTGACGTGCGCAGCTCAGGGGCATGATGTGACTGTCGCCCGTACATTTAGCCCATACATCCCCATGTATAATCATTTGCATCCATACATTTTGATGGCCGCACGGCGCGAAGCAAAAATTACGGCTCCTCGCTGCAGACCTGCGAGCAGGGAAACGCTCCCCTCACAGACGCGTTGAATTGTCCCCACGCCGCGCCCCTGTAGAGAAATATAAAAGGTTAGGATTTGCCACTGAGGTTCTTCTTTCATATACTTCCTTTTAAAATCTTGCTAGGATACAGTTCTCACATCACATCCGAACATAAACAACCATGGGTAGGAGGGCTTTTGTAGAAAGAAATACGAACGAAACGAAAATCAGCGTTGCCATCGCTTTGGACAAAGCTCCCTTACCTGAAGAGTCGAATTTTATTGATGAACTTATAACTTCCAAGCATGCAAACCAAAAGGGAGAACAAGTAATCCAAGTAGACACGGGAATTGGATTCTTGGATCACATGTATCATGCACTGGCTAAACATGCAGGCTGGAGCTTACGACTTTACTCAAGAGGTGATTTAATCATCGATGATCATCACACTGCAGAAGATACTGCTATTGCACTTGGTATTGCATTCAAGCAGGCTATGGGTAACTTTGCCGGCGTTAAAAGATTTGGACATGCTTATTGTCCACTTGACGAAGCTCTTTCTAGAAGCGTAGTTGACTTGTCGGGACGGCCCTATGCTGTTATCGATTTGGGATTAAAGCGTGAAAAGGTTGGGGAATTGTCCTGTGAAATGATCCCTCACTTACTATATTCCTTTTCGGTAGCAGCTGGAATTACTTTGCATGTTACCTGCTTATATGGTAGTAATGACCATCATCGTGCTGAAAGCGCTTTTAAATCTCTGGCTGTTGCCATGCGCGCGGCTACTAGTCTTACTGGAAGTTCTGAAGTCCCAAGCACGAAGGGAGTGTTGTAAAGAGTACTGACAATAAAAAGATTCTTGTTTTCAAGAACTTGTCATTTGTATAGTTTTTTTATATTGTAGTTGTTCTATTTTAATCAAATGTTAGCGTGATTTATATTTTTTTTCGCCTCGACATCATCTGCCCAGATGCGAAGTTAAGTGCGCAGAAAGTAATATCATGCGTCAATCGTATGTGAATGCTGGTCGCTATACTGCTGTCGATTCGATACTAACGCCGCCATCCAGTTTAAACGAGCTCGAATTCATCGA
7+
>FLAG-3x
8+
AGATTACAAGGATCACGATGGCGATTACAAGGATCACGATATCGATTACAAGGATGATGATGATAAG
9+
>FRB
10+
ATATTGTGGCACGAGATGTGGCACGAAGGGCTGGAAGAGGCCTCTAGGCTATACTTTGGCGAGCGTAATGTCAAAGGGATGTTCGAGGTGCTAGAGCCCCTTCACGCGATGATGGAGAGAGGTCCACAGACTCTGAAAGAAACGAGCTTCAATCAAGCCTACGGTAGGGACTTGATGGAAGCTCAAGAGTGGTGTCGTAAGTATATGAAATCCGGGAACGTCAAAGACTTGTTACAAGCTTGGGATCTGTATTACCATGTCTTCCGTAGAATCAGCAAG
11+
>GFP
12+
GTAAAGGTGAGGAATTATTTACAGGCGTAGTACCAATCCTAGTAGAGTTAGACGGCGACGTCAATGGCCACAAATTTAGTGTCTCTGGCGAGGGTGAAGGTGATGCTACCTACGGTAAGTTAACGCTAAAATTTATATGCACTACGGGTAAATTACCAGTACCGTGGCCCACATTAGTGACAACTTTTACTTATGGAGTGCAGTGTTTTTCCCGTTACCCGGATCACATGAAAAGGCACGACTTCTTCAAATCTGCTATGCCGGAAGGGTACGTTCAAGAAAGAACTATATTTTTTAAGGACGACGGGAATTACAAGACCAGAGCTGAAGTAAAATTTGAGGGAGACACCTTGGTTAACAGAATTGAGCTAAAGGGAATAGATTTCAAAGAAGATGGGAACATCCTAGGCCATAAATTAGAGTACAACTATAATTCACACAATGTGTATATAATGGCAGATAAGCAGAAAAATGGAATTAAAGTTAACTTCAAGATTAGACACAATATCGAAGATGGGAGTGTCCAGCTAGCCGATCACTATCAACAGAATACGCCGATTGGCGATGGGCCTGTCCTTTTGCCAGATAATCACTATCTTTCTACACAATCTGCTCTGAGTAAGGACCCGAATGAGAAACGTGACCACATGGTCCTGTTGGAATTTGTAACAGCAGCGGGCATAACACACGGCATGGATGAGCTATATAAA
13+
>HA_v1
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TACCCATACGATGTTCCAGATTACGCTTACCCATACGATGTTCCAGATTACGCTTACCCATACGATGTTCCAGATTACGCT
15+
>HA_v2
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TATCCATATGATGTTCCAGATTATGCTTATCCATATGATGTTCCAGATTATGCTTATCCATATGATGTTCCAGATTATGCT
17+
>HA_v3
18+
GCGGCCGTTTACCCATACGATGTTCCTGACTATGCGGGCTATCCCTATGACGTCCCGGACTATGCAGGATCCTATCCATATGACGTTCCAGATTACGCTCCGGCCGCC
19+
>HaloTag
20+
AATGCAGAAATAGGGACAGGCTTTCCTTTTGATCCCCATTATGTAGAGGTACTAGGAGAACGTATGCATTACGTGGACGTGGGACCAAGAGATGGCACCCCAGTTCTTTTTTTACACGGAAACCCAACCAGTTCTTATGTCTGGAGGAACATCATCCCTCACGTTGCTCCAACTCACAGATGTATAGCGCCTGATCTGATTGGGATGGGTAAATCAGACAAACCCGACTTGGGCTACTTCTTCGATGACCACGTCAGATTTATGGACGCGTTCATTGAGGCACTTGGGTTGGAAGAAGTCGTCCTGGTAATACATGACTGGGGATCAGCCCTGGGATTTCATTGGGCTAAAAGGAATCCAGAGAGAGTAAAAGGGATTGCCTTCATGGAGTTTATCAGGCCCATACCCACCTGGGATGAGTGGCCCGAGTTTGCTAGAGAGACCTTCCAGGCTTTCAGGACTACCGATGTCGGCCGTAAATTGATTATTGACCAAAATGTTTTCATCGAGGGAACGTTGCCTATGGGCGTAGTCCGTCCCCTAACGGAGGTCGAAATGGATCATTACAGAGAACCGTTTTTGAACCCTGTAGACCGTGAGCCACTGTGGCGTTTTCCAAACGAATTACCGATAGCTGGCGAACCCGCTAATATCGTCGCCCTGGTAGAGGAATACATGGACTGGCTTCATCAAAGTCCTGTTCCCAAATTGTTATTTTGGGGTACACCAGGTGTATTAATTCCACCTGCCGAAGCCGCCAGGTTGGCAAAATCATTACCGAACTGCAAAGCTGTAGACATCGGCCCCGGTTTGAATCTGCTGCAGGAGGATAACCCGGATTTGATAGGGTCTGAAATCGCGCGTTGGTTGTCAACCCTGGAAATATCAGGC
21+
>MNase_v2
22+
CCGCCACCAGTACCAAGAAGCTGCACAAGGAGCCCGCCACCCTGATCAAGGCCATAGATGGCGATACCGTGAAGCTGATGTATAAGGGCCAGCCCATGACCTTCCGCCTGCTGCTGGTGGATACCCCCGAGACCAAGCACCCGAAAAAGGGCGTGGAAAAGTACGGACCCGAGGCCAGCGCCTTCACAAAAAAGATGGTGGAGAACGCCAAGAAAATCGAGGTGGAGTTCGATAAAGGCCAACGCACCGATAAGTATGGACGCGGTCTGGCCTACATCTACGCCGACGGCAAAATGGTGAACGAGGCCCTGGTGCGGCAGGGACTGGCCAAGGTGGCGTACGTGTACAAGCCCAACAACACCCACGAGCAGCACCTGCGCAAGAGCGAGGCTCAGGCAAAGAAGGAGAAACTGAACATCTGGAGTGAGGATAACGCCGATAGCGGCCAGT
23+
>Myc-3x
24+
GGCGAACAGAAGCTAATCAGTGAGGAGGACCTTAATGGTGAGCAGAAACTAATCTCTGAAGAGGATTTGAATGGAGAACAAAAGCTGATTTCTGAGGAGGACTTAAAC
25+
>ProteinA
26+
AAAACGGCAGCTTTAGCGCAGCACGACGAGGCTGTGGACAATAAGTTTAACAAGGAGCAGCAGAACGCATTCTACGAGATCCTTCATCTGCCTAACCTGAATGAGGAACAAAGGAACGCGTTCATTCAAAGTCTGAAGGACGACCCAAGCCAGTCAGCGAATTTGCTTGCCGAAGCAAAAAAACTGAACGACGCCCAAGCGCCCAAAGTCGATAATAAATTCAATAAGGAACAGCAGAATGCATTCTATGAGATTCTGCATCTACCGAATCTTAACGAAGAACAGAGGAACGCCTTTATCCAGTCTCTAAAGGATGATCCAAGCCAATCCGCTAACCTATTAGCTGAAGCAAAGAAGCTTAATGGAGCCCAAGCACCGAAAGTTGATGCCAACAGTGCCGGTAAATCAACT

‎EpitopeID/ecoli_EpiID/FASTA_tag/ALL_TAG.fa.amb‎

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5492 13 0

‎EpitopeID/ecoli_EpiID/FASTA_tag/ALL_TAG.fa.ann‎

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5492 13 11
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0 AID (null)
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0 132 0
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0 CBP (null)
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132 78 0
6+
0 Extended-Tap (null)
7+
210 2096 0
8+
0 FLAG-3x (null)
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2306 67 0
10+
0 FRB (null)
11+
2373 279 0
12+
0 GFP (null)
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2652 710 0
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0 HA_v1 (null)
15+
3362 81 0
16+
0 HA_v2 (null)
17+
3443 81 0
18+
0 HA_v3 (null)
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3524 108 0
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0 HaloTag (null)
21+
3632 891 0
22+
0 MNase_v2 (null)
23+
4523 450 0
24+
0 Myc-3x (null)
25+
4973 108 0
26+
0 ProteinA (null)
27+
5081 411 0

‎EpitopeID/ecoli_EpiID/FASTA_tag/ALL_TAG.fa.bwt‎

5.44 KB
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‎EpitopeID/ecoli_EpiID/FASTA_tag/ALL_TAG.fa.pac‎

1.34 KB
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‎EpitopeID/ecoli_EpiID/FASTA_tag/ALL_TAG.fa.sa‎

2.73 KB
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‎EpitopeID/ecoli_EpiID/FASTA_tag/Tag_DB/AID.fa‎

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>AID
2+
CCAAAAGATCCGGCGAAGCCACCCGCGAAGGCGCAGGTTGTTGGTTGGCCACCTGTAAGGTCATATCGTAAGAATGTTATGGTTAGCTGTCAGAAGAGCAGTGGCGGTCCAGAGGCCGCTGCATTTGTGAAA

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