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benjaminbeer256benjaminbeer256
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transferred scripts from separate repo
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‎python/__pycache__/composite.cpython-39.pyc‎

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‎python/__pycache__/plot.cpython-39.pyc‎

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‎python/__pycache__/slidingWindow.cpython-39.pyc‎

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‎python/combined_template.xml‎

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<svg id="main-plot" baseProfile="full" version="1.1" xmlns="http://www.w3.org/2000/svg"
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font-family="Helvetica" style="height: 50vh; max-width: 100%; overflow: hide;"
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viewBox="0 0 460 300">
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<g transform="translate(0 265)" fill="none" font-size="10" font-family="sans-serif"
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text-anchor="middle">
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<path class="domain" stroke="currentColor" d="M40.5,-6V0.5H290.5V-6"></path>
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<g class="tick" opacity="1" transform="translate(40.5,0)">
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<line stroke="currentColor" y2="-6"></line>
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<text fill="currentColor" y="-9" dy="0em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(65.5,0)">
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<line stroke="currentColor" y2="-6"></line>
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<text fill="currentColor" y="-9" dy="0em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(90.5,0)">
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<line stroke="currentColor" y2="-6"></line>
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<text fill="currentColor" y="-9" dy="0em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(115.5,0)">
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<line stroke="currentColor" y2="-6"></line>
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<text fill="currentColor" y="-9" dy="0em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(140.5,0)">
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<line stroke="currentColor" y2="-6"></line>
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<text fill="currentColor" y="-9" dy="0em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(165.5,0)">
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<line stroke="currentColor" y2="-6"></line>
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<text fill="currentColor" y="-9" dy="0em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(190.5,0)">
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<line stroke="currentColor" y2="-6"></line>
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<text fill="currentColor" y="-9" dy="0em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(215.5,0)">
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<line stroke="currentColor" y2="-6"></line>
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<text fill="currentColor" y="-9" dy="0em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(240.5,0)">
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<line stroke="currentColor" y2="-6"></line>
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<text fill="currentColor" y="-9" dy="0em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(265.5,0)">
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<line stroke="currentColor" y2="-6"></line>
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<text fill="currentColor" y="-9" dy="0em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(290.5,0)">
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<line stroke="currentColor" y2="-6"></line>
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<text fill="currentColor" y="-9" dy="0em"></text>
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</g>
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</g>
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<g transform="translate(0 30)" fill="none" font-size="10" font-family="sans-serif"
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text-anchor="middle">
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<path class="domain" stroke="currentColor" d="M40.5,6V0.5H290.5V6"></path>
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<g class="tick" opacity="1" transform="translate(40.5,0)">
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<line stroke="currentColor" y2="6"></line>
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<text fill="currentColor" y="9" dy="0.71em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(65.5,0)">
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<line stroke="currentColor" y2="6"></line>
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<text fill="currentColor" y="9" dy="0.71em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(90.5,0)">
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<line stroke="currentColor" y2="6"></line>
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<text fill="currentColor" y="9" dy="0.71em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(115.5,0)">
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<line stroke="currentColor" y2="6"></line>
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<text fill="currentColor" y="9" dy="0.71em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(140.5,0)">
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<line stroke="currentColor" y2="6"></line>
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<text fill="currentColor" y="9" dy="0.71em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(165.5,0)">
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<line stroke="currentColor" y2="6"></line>
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<text fill="currentColor" y="9" dy="0.71em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(190.5,0)">
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<line stroke="currentColor" y2="6"></line>
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<text fill="currentColor" y="9" dy="0.71em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(215.5,0)">
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<line stroke="currentColor" y2="6"></line>
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<text fill="currentColor" y="9" dy="0.71em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(240.5,0)">
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<line stroke="currentColor" y2="6"></line>
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<text fill="currentColor" y="9" dy="0.71em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(265.5,0)">
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<line stroke="currentColor" y2="6"></line>
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<text fill="currentColor" y="9" dy="0.71em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(290.5,0)">
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<line stroke="currentColor" y2="6"></line>
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<text fill="currentColor" y="9" dy="0.71em"></text>
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</g>
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</g>
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<g transform="translate(40 0)" fill="none" font-size="10" font-family="sans-serif"
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text-anchor="start">
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<path class="domain" stroke="currentColor" d="M6,265.5H0.5V30.5H6"></path>
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<g class="tick" opacity="1" transform="translate(0,265.5)">
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<line stroke="currentColor" x2="6"></line>
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<text fill="currentColor" x="9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,242)">
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<line stroke="currentColor" x2="6"></line>
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<text fill="currentColor" x="9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,218.5)">
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<line stroke="currentColor" x2="6"></line>
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<text fill="currentColor" x="9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,195)">
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<line stroke="currentColor" x2="6"></line>
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<text fill="currentColor" x="9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,171.5)">
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<line stroke="currentColor" x2="6"></line>
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<text fill="currentColor" x="9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,148)">
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<line stroke="currentColor" x2="6"></line>
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<text fill="currentColor" x="9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,124.5)">
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<line stroke="currentColor" x2="6"></line>
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<text fill="currentColor" x="9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,101.00000000000001)">
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<line stroke="currentColor" x2="6"></line>
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<text fill="currentColor" x="9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,77.49999999999999)">
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<line stroke="currentColor" x2="6"></line>
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<text fill="currentColor" x="9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,53.99999999999999)">
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<line stroke="currentColor" x2="6"></line>
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<text fill="currentColor" x="9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,30.5)">
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<line stroke="currentColor" x2="6"></line>
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<text fill="currentColor" x="9" dy="0.32em"></text>
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</g>
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</g>
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<g transform="translate(290 0)" fill="none" font-size="10" font-family="sans-serif"
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text-anchor="end">
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<path class="domain" stroke="currentColor" d="M-6,265.5H0.5V30.5H-6"></path>
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<g class="tick" opacity="1" transform="translate(0,265.5)">
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<line stroke="currentColor" x2="-6"></line>
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<text fill="currentColor" x="-9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,242)">
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<line stroke="currentColor" x2="-6"></line>
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<text fill="currentColor" x="-9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,218.5)">
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<line stroke="currentColor" x2="-6"></line>
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<text fill="currentColor" x="-9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,195)">
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<line stroke="currentColor" x2="-6"></line>
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<text fill="currentColor" x="-9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,171.5)">
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<line stroke="currentColor" x2="-6"></line>
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<text fill="currentColor" x="-9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,148)">
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<line stroke="currentColor" x2="-6"></line>
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<text fill="currentColor" x="-9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,124.5)">
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<line stroke="currentColor" x2="-6"></line>
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<text fill="currentColor" x="-9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,101.00000000000001)">
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<line stroke="currentColor" x2="-6"></line>
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<text fill="currentColor" x="-9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,77.49999999999999)">
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<line stroke="currentColor" x2="-6"></line>
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<text fill="currentColor" x="-9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,53.99999999999999)">
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<line stroke="currentColor" x2="-6"></line>
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<text fill="currentColor" x="-9" dy="0.32em"></text>
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</g>
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<g class="tick" opacity="1" transform="translate(0,30.5)">
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<line stroke="currentColor" x2="-6"></line>
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<text fill="currentColor" x="-9" dy="0.32em"></text>
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</g>
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</g>
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<line x1="165" x2="165" y1="265" y2="30" stroke="gray" stroke-width="1" stroke-dasharray="5,5"
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opacity="0.5"></line>

‎python/composite.py‎

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import numpy as np
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import csv
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import xml.dom.minidom as dom
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import argparse
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import math
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class Composite:
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def __init__(self, xmin=None, xmax=None, sense=[], anti=[]):
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self.xmin = xmin
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self.xmax = xmax
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self.sense = sense
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self.anti = anti
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def __str__(self):
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return "Sense: " + str(self.sense) + "\nAnti: " + str(self.anti) + "\nXMin: " + str(self.xmin) + "\nXMax: " + str(self.xmax)
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def parseComposite(file):
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fileArr = open(file, "r").read().split("\n")
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xmin = None
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xmax = None
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sense = []
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anti = []
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xmin_curr = 0
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xmax_curr = 0
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offset = 0
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for line in fileArr:
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print("line")
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# Skip empty
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if len(line.strip()) == 0 :
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continue
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# Separate fields
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fields = line.split("\t")
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if fields[0] == "" or fields[0] == "NAME":
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print("name")
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xmin_curr = int(float(fields[1]))
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xmax_curr = int(float(fields[-1]))
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# If the x domain starts at 0 shift it to the left
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if xmin_curr == 0:
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xmin_curr -= math.floor(xmax_curr / 2)
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xmax_curr -= math.floor(xmax_curr / 2)
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# If the x domain is not defined yet, define it
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if xmin == None or xmax == None:
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xmin = xmin_curr
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xmax = xmax_curr
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# Redefine min and max if necessary
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xmax = max(xmax_curr, xmax)
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xmin = min(xmin_curr, xmin)
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sense = [0] * (xmax - xmin + 1)
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anti = [0] * (xmax - xmin + 1)
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# Add the values to sense and anti arrays
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if "sense" in fields[0].lower():
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print("sense")
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i = 1
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while i < len(fields):
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sense[offset + i - 1] += float(fields[i])
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i += 1
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elif "anti" in fields[0].lower():
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i = 1
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while i < len(fields):
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anti[offset + i - 1] += float(fields[i])
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i += 1
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# If the first field is not empty or "NAME" and does not contain "sense" or "anti" parse as combined or midpoint data
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elif not (fields[0] == "" or fields[0] == "NAME"):
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i = 1
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while i < len(fields):
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sense[offset + i - 1] += float(fields[i]) / 2
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anti[offset + i - 1] += float(fields[i]) / 2
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return Composite(xmin, xmax, sense, anti)
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def main():
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c = parseComposite("sample.out")
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print(c)
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if __name__ == "__main__":
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main()

‎python/composite_average copy.out‎

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‎python/composite_average.out‎

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