minor comment fix for accuracy

Leftover and inaccurate comment was corrected to describe behavior of file parsing in ShiftCoord and TwoColorHeatmap

Author: owlang

src/scripts/Coordinate_Manipulation/ShiftCoord.java

@@ -42,7 +42,7 @@ public static void shiftBEDInterval(File out_filepath, File input, int SHIFT, bo
 				OUT = new PrintStream(new BufferedOutputStream(new FileOutputStream(out_filepath)));
 			}
 		}
-		// Assume file is gzipped and create normal BufferedReader if not
+		// Check if file is gzipped and instantiate appropriate BufferedReader
 		BufferedReader br;
 		if(GZipUtilities.isGZipped(input)) {
 			br = new BufferedReader(new InputStreamReader(new GZIPInputStream(new FileInputStream(input)), "UTF-8"));
@@ -111,7 +111,7 @@ public static void shiftGFFInterval(File out_filepath, File input, int SHIFT, bo
 				OUT = new PrintStream(new BufferedOutputStream(new FileOutputStream(out_filepath)));
 			}
 		}
-		// Assume file is gzipped and create normal BufferedReader if not
+		// Check if file is gzipped and instantiate appropriate BufferedReader
 		BufferedReader br;
 		if(GZipUtilities.isGZipped(input)) {
 			br = new BufferedReader(new InputStreamReader(new GZIPInputStream(new FileInputStream(input)), "UTF-8"));

src/scripts/Figure_Generation/TwoColorHeatMap.java

@@ -367,7 +367,7 @@ public static double getQuantile(ArrayList<double[]> matrix, double percent) {
 	public static ArrayList<double[]> loadMatrix(File input) throws UnsupportedEncodingException, IOException {
 		ArrayList<double[]> matrix = new ArrayList<double[]>();
 		int currentRow = 0;
-		// Assume file is gzipped and create normal BufferedReader if not
+		// Check if file is gzipped and instantiate appropriate BufferedReader
 		BufferedReader br;
 		if(GZipUtilities.isGZipped(input)) {
 			br = new BufferedReader(new InputStreamReader(new GZIPInputStream(new FileInputStream(input)), "UTF-8"));