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add missing gzOutput flag to logging command build
1 parent 204ec47 commit a870ecc

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src/main/java/scriptmanager/cli/Peak_Analysis/FilterBEDbyProximityCLI.java

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Original file line numberDiff line numberDiff line change
@@ -100,6 +100,7 @@ public static String getCLIcommand(File input, File output, int exclusion, boole
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String command = "java -jar $SCRIPTMANAGER peak-analysis filter-bed";
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command += " " + input.getAbsolutePath();
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command += " -o " + output.getAbsolutePath();
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command += gzOutput ? " -z " : "";
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command += " -e " + exclusion;
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return command;
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}

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