Merge pull request #13 from COBREXA/mk-fix-cobrapy

Author: stelmo

Project.toml

@@ -1,7 +1,7 @@
 name = "JSONFBCModels"
 uuid = "475c1105-d6ed-49c1-9b32-c11adca6d3e8"
 authors = ["The authors of JSONFBCModels.jl"]
-version = "1.0.0"
+version = "1.0.1"
 
 [deps]
 AbstractFBCModels = "5a4f3dfa-1789-40f8-8221-69268c29937c"

src/grr_utils.jl

@@ -181,8 +181,8 @@ Formats a DNF gene association as a `String`.
 """
 function format_gene_association_dnf(
     grr::A.GeneAssociationDNF;
-    and = " && ",
-    or = " || ",
+    and = " & ",
+    or = " | ",
 )::String
     return join(("(" * join(gr, and) * ")" for gr in grr), or)
 end

src/interface.jl

@@ -6,7 +6,8 @@ JSONFBCModel(json::Dict{String,Any}) = begin
 
     mkey = first(intersect(keys(json), constants.keynames.metabolites))
     ms = json[mkey]
-    isnothing(mkey) && throw(DomainError(keys(json), "JSON model has no metabolite keys"))
+    isnothing(mkey) &&
+        throw(DomainError(keys(json), "JSON model has no metabolite keys"))
 
     gkey = first(intersect(keys(json), constants.keynames.genes))
     gs = isnothing(gkey) ? [] : json[gkey]