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‎.github/workflows/build-and-push-jupyterlab-image.yml‎

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name: build-and-push-jupyterlab-image
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on:
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workflow_dispatch: # This allows you to manually trigger the action from GitHub UI.
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jobs:
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build:
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runs-on: ubuntu-latest
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steps:
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- name: Checkout
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uses: actions/checkout@v4
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- name: Set up Docker Buildx
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id: buildx
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uses: docker/setup-buildx-action@v3
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- name: Login to dockerhub
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uses: docker/login-action@v3
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with:
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username: ${{ secrets.DOCKERHUB_USERNAME }}
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password: ${{ secrets.DOCKERHUB_PASSWORD }}
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- name: Get lowercase repo name (for dynamic tags)
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id: repo_name
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run: |
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lowercase_name=$(echo ${{ github.event.repository.name }} | tr '[:upper:]' '[:lower:]')
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echo "repo_name=${lowercase_name}" >> "$GITHUB_OUTPUT"
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- name: Build and push latest
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id: docker_build_jupyterlab
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uses: docker/build-push-action@v5
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with:
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context: containers/jupyterlab
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file: containers/jupyterlab/Dockerfile
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builder: ${{ steps.buildx.outputs.name }}
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push: true
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tags: |
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esiil/${{ steps.repo_name.outputs.repo_name }}_jupyterlab:latest
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- name: Image digest
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run: echo ${{ steps.docker_build_jupyterlab.outputs.digest }}

‎.github/workflows/fetch-template.yml‎

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name: Sync with Template Repository
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on:
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workflow_dispatch:
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jobs:
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sync_template:
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runs-on: ubuntu-latest
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steps:
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- name: Checkout main repository
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uses: actions/checkout@v4
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- name: Configure Git for merge
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run: |
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git config --global user.name "github-actions"
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git config --global user.email "actions@users.noreply.github.com"
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- name: Fetch template repository
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run: git fetch --no-tags --no-recurse-submodules https://github.com/CU-ESIIL/Working_group_OASIS.git +refs/heads/*:refs/remotes/template/*
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- name: Merge changes from template repository
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run: |
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git merge --no-commit --no-ff --allow-unrelated-histories template/main || true
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git checkout --ours .
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git add .
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- name: Commit changes
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run: git commit -am "Merge changes from template repository"
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- name: Push changes
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uses: ad-m/github-push-action@v0.6.0
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with:
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github_token: ${{ secrets.GITHUB_TOKEN }}

‎.github/workflows/pages.yml‎

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name: Deploy MkDocs site to GitHub Pages
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on:
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push:
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branches:
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- main
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workflow_dispatch:
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permissions:
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contents: read
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pages: write
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id-token: write
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concurrency:
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group: pages
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cancel-in-progress: true
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jobs:
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deploy:
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runs-on: ubuntu-latest
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environment:
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name: github-pages
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url: ${{ steps.deployment.outputs.page_url }}
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steps:
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- name: Checkout repository
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uses: actions/checkout@v4
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: '3.11'
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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if [ -f requirements.txt ]; then
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python -m pip install -r requirements.txt
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else
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python -m pip install mkdocs
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fi
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- name: Build MkDocs site
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run: mkdocs build --strict --clean --site-dir dist
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- name: Configure GitHub Pages
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uses: actions/configure-pages@v5
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with:
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enablement: true
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continue-on-error: true
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- name: Verify Pages is enabled
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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run: |
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set -euo pipefail
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api_url="https://api.github.com/repos/${GITHUB_REPOSITORY}/pages"
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status="$(curl -sS -H "Authorization: Bearer ${GITHUB_TOKEN}" -H "Accept: application/vnd.github+json" -o /tmp/pages-response.json -w "%{http_code}" "${api_url}")"
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if [ "${status}" = "404" ]; then
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echo "::error::Enable GitHub Pages: Settings → Pages → Source = GitHub Actions and Settings → Actions → Workflow permissions = Read and write."
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exit 1
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elif [ "${status}" != "200" ]; then
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echo "::error::Failed to verify GitHub Pages (HTTP ${status})."
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cat /tmp/pages-response.json
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exit 1
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fi
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- name: Upload Pages artifact
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uses: actions/upload-pages-artifact@v3
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with:
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path: ./dist
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- name: Deploy to GitHub Pages
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id: deployment
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uses: actions/deploy-pages@v4

‎.gitignore‎

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# History files
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.Rhistory
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.Rapp.history
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# Session Data files
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.RData
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.RDataTmp
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# User-specific files
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.Ruserdata
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# Example code in package build process
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*-Ex.R
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# Output files from R CMD build
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/*.tar.gz
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# Output files from R CMD check
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/*.Rcheck/
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# RStudio files
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.Rproj.user/
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# produced vignettes
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vignettes/*.html
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vignettes/*.pdf
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# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
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.httr-oauth
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# knitr and R markdown default cache directories
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*_cache/
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/cache/
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# Temporary files created by R markdown
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*.utf8.md
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*.knit.md
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# R Environment Variables
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.Renviron
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# translation temp files
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po/*~
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# RStudio Connect folder
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rsconnect/
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# macOS
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.DS_Store

‎CITATION.cff‎

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cff-version: 1.2.0
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message: "If you use this repository, please cite it as below."
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title: "Project Group OASIS"
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version: "1.0.0"
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doi: 10.5281/zenodo.11166898
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date-released: 2025-09-10
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authors:
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- family-names: Tuff
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given-names: Ty

‎LICENSE‎

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MIT License
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Copyright (c) 2023 Environmental Data Science Innovation and Inclusion Lab (ESIIL)
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.

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