imply plain mzML, when using stdout

caetera · caetera · commit 410ff006b259 · 2022-05-16T18:36:58.000+02:00
diff --git a/MainClass.cs b/MainClass.cs
@@ -685,6 +685,9 @@ private static void RegularParametersParsing(string[] args)
                 if (parseInput.StdOut)
                 {
                     parseInput.LogFormat = LogFormat.SILENT;
+
+                    //use non-indexed mzML with stdout
+                    if (parseInput.OutputFormat == OutputFormat.IndexMzML) parseInput.OutputFormat = OutputFormat.MzML;
                 }
 
                 if (parseInput.S3Url != null && parseInput.S3AccessKeyId != null &&

Original file line number	Diff line number	Diff line change
`@@ -685,6 +685,9 @@ private static void RegularParametersParsing(string[] args)`
`685`	`685`	`if (parseInput.StdOut)`
`686`	`686`	`{`
`687`	`687`	`parseInput.LogFormat = LogFormat.SILENT;`
	`688`	`+`
	`689`	`+ //use non-indexed mzML with stdout`
	`690`	`+ if (parseInput.OutputFormat == OutputFormat.IndexMzML) parseInput.OutputFormat = OutputFormat.MzML;`
`688`	`691`	`}`
`689`	`692`
`690`	`693`	`if (parseInput.S3Url != null && parseInput.S3AccessKeyId != null &&`