changed MS:1002481 to MS:1000422 for compatibility with downstream tools

increased version

Author: nielshulstaert

Properties/AssemblyInfo.cs

@@ -32,7 +32,7 @@
 // You can specify all the values or you can default the Build and Revision Numbers 
 // by using the '*' as shown below:
 // [assembly: AssemblyVersion("1.0.*")]
-[assembly: AssemblyVersion("1.1.1.0")]
-[assembly: AssemblyFileVersion("1.1.1.0")]
+[assembly: AssemblyVersion("1.1.2.0")]
+[assembly: AssemblyFileVersion("1.1.2.0")]
 
 [assembly: log4net.Config.XmlConfigurator(ConfigFile = "log4net.config")]

Writer/MzMlSpectrumWriter.cs

@@ -37,6 +37,7 @@ public class MzMlSpectrumWriter : SpectrumWriter
         // Precursor scan number for reference in the precursor element of an MS2 spectrum
         private int _precursorScanNumber;
 
+        private const string SourceFileId = "RAW1";
         private readonly XmlSerializerFactory factory = new XmlSerializerFactory();
         private const string Ns = "http://psi.hupo.org/ms/mzml";
         private readonly XmlSerializer cvParamSerializer;
@@ -148,7 +149,7 @@ public override void Write(IRawDataPlus rawFile, int firstScanNumber, int lastSc
                 _writer.WriteAttributeString("count", "1");
                 //     sourceFile
                 _writer.WriteStartElement("sourceFile");
-                _writer.WriteAttributeString("id", ParseInput.RawFileName);
+                _writer.WriteAttributeString("id", SourceFileId);
                 _writer.WriteAttributeString("name", ParseInput.RawFileNameWithoutExtension);
                 _writer.WriteAttributeString("location", ParseInput.RawFilePath);
                 SerializeCvParam(new CVParamType
@@ -252,6 +253,7 @@ public override void Write(IRawDataPlus rawFile, int firstScanNumber, int lastSc
                 _writer.WriteAttributeString("defaultInstrumentConfigurationRef", "IC1");
                 _writer.WriteAttributeString("startTimeStamp",
                     XmlConvert.ToString(_rawFile.CreationDate, XmlDateTimeSerializationMode.Utc));
+                _writer.WriteAttributeString("defaultSourceFileRef", SourceFileId);
                 //    spectrumList
                 _writer.WriteStartElement("spectrumList");
                 _writer.WriteAttributeString("count", _rawFile.RunHeaderEx.SpectraCount.ToString());

Writer/OntologyMapping.cs

@@ -166,8 +166,8 @@ public static class OntologyMapping
                 {
                     ActivationType.HigherEnergyCollisionalDissociation, new CVParamType
                     {
-                        accession = "MS:1002481",
-                        name = "higher energy beam-type collision-induced dissociation",
+                        accession = "MS:1000422",
+                        name = "beam-type collision-induced dissociation",
                         cvRef = "MS",
                         value = ""
                     }