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{
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"cells": [
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{
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"cell_type": "markdown",
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"id": "d87403fc",
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"metadata": {},
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"source": [
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"<!-- HTML file automatically generated from DocOnce source (https://github.com/doconce/doconce/)\n",
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"doconce format html projectwriting.do.txt -->\n",
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"<!-- dom:TITLE: How to write a scientific project -->"
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]
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},
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{
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"cell_type": "markdown",
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"id": "e88d6de0",
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"metadata": {},
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"source": [
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"# How to write a scientific project\n",
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"**Morten Hjorth-Jensen**, Department of Physics, University of Oslo and Department of Physics and Astronomy and National Superconducting Cyclotron Laboratory, Michigan State University\n",
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"\n",
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"Date: **Sep 26, 2023**\n",
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"\n",
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"Copyright 1999-2023, Morten Hjorth-Jensen. Released under CC Attribution-NonCommercial 4.0 license"
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]
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},
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{
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"cell_type": "markdown",
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"id": "2b6137a3",
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"metadata": {},
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"source": [
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"## The report: how to write a good scienfitic/technical report\n",
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"**What should it contain? A typical structure.**\n",
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"\n",
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" * An abstract where you give the main summary of your work\n",
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"\n",
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" * An introduction where you explain the aims and rationale for the physics case and what you have done. At the end of the introduction you should give a brief summary of the structure of the report\n",
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"\n",
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" * Theoretical models and technicalities. This is the methods section\n",
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"\n",
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" * Code structure, tests and more\n",
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"\n",
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" * Results and discussion\n",
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"\n",
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" * Conclusions and perspectives\n",
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"\n",
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" * Appendix with extra material\n",
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"\n",
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" * Bibliography\n",
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"\n",
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"Keep always a good log of what you do."
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]
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},
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{
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"cell_type": "markdown",
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"id": "7b782bf5",
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"metadata": {},
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"source": [
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"## The report, the abstract\n",
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"The abstract gives the reader a quick overview of what has been done and the most important results. Here is a typical example\n",
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"taken from a recent [scientific article](https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.131.131401) \n",
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"\n",
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"**We construct the first four-dimensional multiple black hole solution of general relativity with a positive cosmological constant. The solution consists of two static black holes whose gravitational attraction is balanced by the cosmic expansion. These static binaries provide the first four-dimensional example of nonuniqueness in general relativity without matter.**\n",
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"\n",
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"If you have specific recommendations and/or results you may also highlight them in the abstract."
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]
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},
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{
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"cell_type": "markdown",
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"id": "64115d65",
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"metadata": {},
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"source": [
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"## The report, the introduction\n",
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"**What should I focus on? Introduction.**\n",
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"\n",
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"You don't need to answer all questions in a chronological order. When you write the introduction you could focus on the following aspects\n",
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" * Motivate the reader, the first part of the introduction gives always a motivation and tries to give the overarching ideas\n",
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"\n",
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" * What I have done\n",
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"\n",
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" * The structure of the report, how it is organized etc"
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]
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},
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{
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"cell_type": "markdown",
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"id": "f5d92d4d",
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"metadata": {},
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"source": [
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"## The report, discussion of methods and codes\n",
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"**What should I focus on? Methods sections.**\n",
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"\n",
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" * Describe the methods and algorithms\n",
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"\n",
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" * You need to explain how you implemented the methods and also say something about the structure of your algorithm and present some parts of your code\n",
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"\n",
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" * You should plug in some calculations to demonstrate your code, such as selected runs used to validate and verify your results. The latter is extremely important!! A reader needs to understand that your code reproduces selected benchmarks and reproduces previous results, either numerical and/or well-known closed form expressions.\n",
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"\n",
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"See also the next slide."
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]
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},
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{
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"cell_type": "markdown",
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"id": "3c40a7db",
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"metadata": {},
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"source": [
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"## The report, code part\n",
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"\n",
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"Try to make a GitHub/Gitlab etc repository with three folders\n",
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"\n",
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"1. One which contains the report\n",
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"\n",
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"2. One which contains some test runs and eventually additional results not presented in the report\n",
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"\n",
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"3. One which contains the code\n",
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"\n",
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"The code should be well documented and make sure it produces the results you are showing in the report. Here you can doucment soruce files and/or jupyter-notebooks.\n",
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"\n",
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"You may also add a README file which tells what is contained in the this repository."
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]
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},
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{
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"cell_type": "markdown",
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"id": "827a5d78",
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"metadata": {},
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"source": [
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"## The report, results part\n",
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"**What should I focus on? Results.**\n",
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"\n",
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" * Present your results\n",
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"\n",
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" * Give a critical discussion of your work and place it in the correct context.\n",
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"\n",
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" * Relate your work to other calculations/studies\n",
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"\n",
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" * An eventual reader should be able to reproduce your calculations. All input variables should be properly explained.\n",
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"\n",
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" * Make sure that figures and tables should contain enough information in their captions, axis labels etc so that an eventual reader can gain a first impression of your work by studying figures and tables only."
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]
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},
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{
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"cell_type": "markdown",
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"id": "af36654a",
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"metadata": {},
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"source": [
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"## The report, conclusions and perspectives\n",
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"**What should I focus on? Conclusions.**\n",
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"\n",
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" * State your main findings and interpretations\n",
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"\n",
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" * Try as far as possible to present perspectives for future work\n",
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"\n",
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" * Try to discuss the pros and cons of the methods and possible improvements"
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]
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},
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{
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"cell_type": "markdown",
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"id": "4e1110c4",
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"metadata": {},
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"source": [
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"## The report, appendices\n",
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"**What should I focus on? additional material.**\n",
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"\n",
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" * Additional calculations used to validate the codes\n",
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"\n",
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" * Selected calculations, these can be listed with few comments\n",
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"\n",
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" * Listing of the code if you feel this is necessary\n",
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"\n",
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"You can consider moving parts of the material from the methods section to the appendix or your GitHub/Gitlab repository. You can also place additional material on your webpage."
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]
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},
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{
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"cell_type": "markdown",
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"id": "3e43a925",
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"metadata": {},
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"source": [
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"## The report, references\n",
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"**What should I focus on? References.**\n",
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"\n",
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" * Give always references to material you base your work on, either scientific articles/reports or books.\n",
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"\n",
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" * Refer to articles as: name(s) of author(s), journal, volume (boldfaced), page and year in parenthesis.\n",
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"\n",
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" * Refer to books as: name(s) of author(s), title of book, publisher, place and year, eventual page numbers"
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]
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},
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{
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"cell_type": "markdown",
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"id": "40bd5668",
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"metadata": {},
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"source": [
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"## Where do I find scientific articles, books etc and examples of reports\n",
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" * With a UiO IP number you can access freely all books and scientific journals available at our [University library](http://www.ub.uio.no/)\n",
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"\n",
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" * For scientific articles, go to for example the journal [Physical Review Letters of the American Physical Society](http://journals.aps.org/prl/issues/117/10)"
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]
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},
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{
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"cell_type": "markdown",
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"id": "3421124c",
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"metadata": {},
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"source": [
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"## Procrastination... the curse of all?\n",
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"<!-- dom:FIGURE: [fig-projectwriting/procrast.jpg, width=700 frac=0.9] -->\n",
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"<!-- begin figure -->\n",
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"\n",
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"<img src=\"fig-projectwriting/procrast.jpg\" width=\"700\"><p style=\"font-size: 0.9em\"><i>Figure 1: </i></p>\n",
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"<!-- end figure -->\n",
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"\n",
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"[Enjoy this video](https://www.youtube.com/watch?v=arj7oStGLkU)\n",
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"\n",
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"[And research shows that procrastinating enhances creativity!!](http://www.nytimes.com/2016/01/17/opinion/sunday/why-i-taught-myself-to-procrastinate.html?_r=0)"
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]
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}
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],
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"metadata": {
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"kernelspec": {
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"display_name": "Python 3 (ipykernel)",
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"language": "python",
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"name": "python3"
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},
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"language_info": {
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"codemirror_mode": {
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"name": "ipython",
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"version": 3
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},
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"file_extension": ".py",
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"mimetype": "text/x-python",
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.9.10"
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}
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},
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"nbformat": 4,
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}
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{'holder': ['Morten Hjorth-Jensen'], 'year': '1999-2023', 'license': 'Released under CC Attribution-NonCommercial 4.0 license', 'cite doconce': False}
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%%%%%%%%%%%%%%%% README %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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% Place the BIBTeX entry in the right category
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%
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% BIBTeX labels: {SurnameYear}, as in Albertsson2018
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% Capitalized words in titles must be placed in {...}, as in:
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% title = {Beyond the proton drip line: {Bayesian} analysis}
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% Journal abbreviations:should be done according to the ISO4 standard:
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% https://academic-accelerator.com/Journal-Abbreviation/System
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% doi - include if possible
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% url - include if possible
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% do not include: abstract; eprint data, report numbers for published papers;
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%%%%%%%%%%%%%%%%% Published scientific articles %%%%%%%%%%%%%%%%%%%
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@article{Cristoforetti:2012su,
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author = "Cristoforetti, Marco and Di Renzo, Francesco and Scorzato, Luigi",
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collaboration = "AuroraScience",
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title = "{New approach to the sign problem in quantum field theories: High density QCD on a Lefschetz thimble}",
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doi = "10.1103/PhysRevD.86.074506",
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journal = "Phys. Rev. D",
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volume = "86",
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pages = "074506",
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year = "2012"
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}
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%%%%%%%%%%%%%%%%% Books %%%%%%%%%%%%%%%%%%%
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@book{Goodfellow2016,
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author ={Goodfellow, Ian and Bengio, Yoshua and Courville, Aaron},
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title = {Deep Learning},
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publisher = {The MIT Press, Cambridge, Massachusetts},
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year = {2016}
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}
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@book{Bishop2006,
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author = {Bishop, Christopher M.},
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title = {Pattern Recognition and Machine Learning},
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year = {2006},
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publisher = {Springer Verlag, Berlin}
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}
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@book{Hastie2009,
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author = {Hastie, Trevor and Tibshirani, Robert and Friedman, Jerome},
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publisher = {Springer Verlag, Berlin},
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title = {The Elements of Statistical Learning: Data Mining, Inference and Prediction},
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year = {2009}
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}
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@book{Murphy2012,
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author = {Murphy, Kevin P.},
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title = {Machine Learning: A Probabilistic Perspective},
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year = {2012},
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publisher = {The MIT Press, Cambdridge, Massachusetts}
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}
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@book{Schuld2018,
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author = {Schuld, Maria and Petruccione, Francesco},
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title = {Supervised Learning with Quantum Computers},
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year = {2018},
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publisher = {Springer Verlag, Berlin}
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}
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@book{Burkard2012,
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author = {R.E. Burkard and M. Dell'Amico and S. Martello},
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title = {Assignment Problems},
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publisher = {SIAM, Philadelphia, USA},
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year = {2012}
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}
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@BOOK{NAS-Models2012,
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author = "{National Research Council}",
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title = "Assessing the Reliability of Complex Models: Mathematical and Statistical Foundations of Verification, Validation, and Uncertainty Quantification",
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isbn = "978-0-309-25634-6",
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doi = "10.17226/13395",
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url = "https://www.nap.edu/catalog/13395/assessing-the-reliability-of-complex-models-mathematical-and-statistical-foundations",
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year = 2012,
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publisher = "The National Academies Press",
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address = "Washington, DC"
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}
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%%%%%%%%%%%%%%%%% REPORTS and THESES %%%%%%%%%%%%%%%%%%%
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@techreport{Young2009,
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title = {Scientific grand challenges: forefront questions in nuclear science and the role of computing at the extreme scale},
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author = {Young, G. and Dean, D.J. and Savage, M.J.},
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year = {2009},
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address = {{Washington, D.C.}},
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institution = {U.S. Department of Energy},
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url="https://science.osti.gov/-/media/ascr/pdf/program-documents/docs/Np_report.pdf"
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}
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@phdthesis{Bradt2017,
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author = {Bradt, Joshua William},
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school = {Michigan State University},
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title = {{Measurement of isobaric analogue resonances of 47Ar with the active target time projection chamber}},
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URL={http://publications.nscl.msu.edu/thesis/\%20Brandt_2017_5279.pdf},
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year = {2017}
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}
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%%%%%%%%%%%%%%%%% Preprints %%%%%%%%%%%%%%%%%%%%%%%%%
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@misc{pescia2021,
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title={Neural-Network Quantum States for Periodic Systems in Continuous Space},
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author={Gabriel Pescia and Jiequn Han and Alessandro Lovato and Jianfeng Lu and Giuseppe Carleo},
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year={2021},
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eprint={2112.11957},
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archivePrefix={arXiv},
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primaryClass={quant-ph}
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}
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%%%%%%%%%%%%%%%%% Conference proceedings %%%%%%%%%%%%%%%%%%%%%%%%%
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@inproceedings{Chen:2021jey,
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author = "Chen, Shi-Yang and Ding, Heng-Tong and Liu, Fei-Yi and Papp, Gabor and Yang, Chun-Bin",
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title = "{Machine learning Hadron Spectral Functions in Lattice QCD}",
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eprint = "2112.00460",
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archivePrefix = "arXiv",
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primaryClass = "hep-lat",
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month = "12",
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year = "2021"
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}
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\usepackage{tikz}
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