Docuented heatmap changes

Author: emouts

R/DEsummaryFuns.R

@@ -6,6 +6,8 @@
 #' rows correspond to genes and columns correspond to samples
 #' @param top.annotation.ids a vector of column indices denoting which columns
 #' of the metadata should become heatmap annotations
+#' @param show.columns.names whether to show the column names below the heatmap;
+#' default is TRUE
 #' @return The heatmap as detailed in the ComplexHeatmap package.
 #' @export
 #' @examples

R/QCplotFuns.R

@@ -24,6 +24,8 @@ jaccard_index <- function(a, b){
 #' of the metadata should become heatmap annotations
 #' @param n.abundant number of most abundant genes to use for the JSI calculation
 #' @param show.values whether to show the JSI values within the heatmap squares
+#' @param show.row.columns.names whether to show the row and column names below 
+#' the heatmap; default is TRUE
 #' @return The JSI heatmap as detailed in the ComplexHeatmap package.
 #' @export
 #' @examples