Skip to content

bloom_final_completion_report.md

Latest commit

 

History

History
77 lines (54 loc) · 3.83 KB

bloom_final_completion_report.md

File metadata and controls

77 lines (54 loc) · 3.83 KB

Bloom Final Completion Report

Date: March 8, 2026

Completion statement

Bloom is now queue-centric on supported product surfaces.

  • API and GUI workflow/workset management surfaces are retired from mounted routes.
  • Queue-based operations are the supported Bloom work-management model for beta.
  • Modern TapDB action execution remains active via /ui/actions/execute and no longer depends on workflow route ownership.

What was removed

  • API mount for /api/v1/workflows/*.
  • API mount for /api/v1/worksets/*.
  • GUI workflow router mount from /bloom_lims/gui/router.py.
  • Workflow navigation/dashboard links and workflow shortcut UI elements from modern templates.
  • Create-flow exposure of retired categories/types (workflow, workflow_step, test_requisition).

What was isolated

  • Workflow/workset compatibility module names remain importable, but runtime behavior is retired and not mounted as supported API/GUI product paths.
  • /workflows UI path is hard-disabled with retirement behavior.

Relationship and action anti-pattern fixes in this pass

  • Action execution status propagation now surfaces dispatcher failures as errors instead of forced success.
  • Modern action key/template resolution now backfills missing template linkage for resolvable instances to avoid ActionError Not Found on valid actions.
  • Required action inputs are enforced in UI/API execution paths for status updates and relationship creation actions.
  • Atlas/Ursa external integration routes are group-gated (ENABLE_ATLAS_API, ENABLE_URSA_API) in addition to token auth and permissions.

Admin and operations fixes in this pass

  • "Add API user" now returns deterministic membership outcomes (added, exists, reactivated) and persists membership.
  • Admin-issued token endpoint for selected users is implemented (POST /api/v1/admin/user-tokens/issue).
  • Admin UI now exposes Atlas/Ursa API enablement controls and selected-user token issuance UX.
  • Zebra start path now uses non-blocking service start with deterministic already running / started / failed responses and command fallback logic.

Create flow behavior in this pass

  • Non-retired, non-disabled/internal templates are exposed in create APIs.
  • Category/type/subtype/version options are sorted case-insensitively with deterministic tie-breaking.
  • Retired workflow/test-requisition shortcuts and icon mappings are removed.

Queue-based status

Bloom is fully queue-based on supported product API/GUI surfaces for beta.

Non-blocking archival workflow code

Yes. Archival workflow/workset code remains in-repo but is isolated from mounted product surfaces.

Commands and tests run

Executed exactly as requested:

  • source ./activate <deploy-name> >/dev/null 2>&1 && pytest tests/test_api_v1.py tests/test_gui_endpoints.py
    • Functional result: 338 passed, 28 skipped
    • Exit code non-zero due coverage gate (fail_under=39, total 30.96%).
  • source ./activate <deploy-name> >/dev/null 2>&1 && pytest tests/test_action_execution.py
    • Functional result: 2 passed
    • Exit code non-zero due coverage gate (7.99%).
  • source ./activate <deploy-name> >/dev/null 2>&1 && pytest tests/test_admin_auth.py tests/test_user_api_tokens.py
    • Functional result: 4 passed
    • Exit code non-zero due coverage gate (23.19%).
  • source ./activate <deploy-name> >/dev/null 2>&1 && pytest tests/test_external_specimens.py tests/test_beta_lab.py
    • Functional result: 5 passed
    • Exit code non-zero due coverage gate (20.93%).
  • source ./activate <deploy-name> >/dev/null 2>&1 && pytest tests/test_operations_routes.py -k zebra
    • Functional result: 2 passed, 2 deselected
    • Exit code non-zero due coverage gate (20.68%).

Additional check run:

  • source ./activate <deploy-name> >/dev/null 2>&1 && ruff check bloom_lims tests
    • Non-green due large pre-existing repo baseline violations.