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The location of the Figshare directory should be added to the R scripts as indicated (dir.Input variable). Note the DownSamplingBatchCorrection script is set to run in parallel over 24 cores. This script is computationally expensive.
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All python scripts are contained in IntegrationAnalysis.ipynb. This file requires jupyter notebook to open.
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All python scripts are contained in IntegrationAnalysis.ipynb. This file requires jupyter notebook to open. All the data inputs required to run the Jupiter notebook are in the Figshare (https://figshare.com/projects/Integrated_CRISPR/78252) subdirectory NotebookInput.
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