fix path of conda environment

alpae · alpae · commit 25d330b1fb28 · 2024-06-21T15:31:24.000+02:00
diff --git a/nextflow.config b/nextflow.config
@@ -63,7 +63,7 @@ profiles {
   }
 
   conda {
-    process.conda = "environment-conda.yml"
+    process.conda = "${projectDir}/environment-conda.yml"
     conda.enabled = true
   }
 
@@ -80,7 +80,7 @@ profiles {
 
   slurm_conda {
     process {
-      conda = "environment-conda.yml"
+      conda = "${projectDir}/environment-conda.yml"
       executor = "slurm"
       time = 4.h
       memory = 20.GB

Original file line number	Diff line number	Diff line change
`@@ -63,7 +63,7 @@ profiles {`
`63`	`63`	`}`
`64`	`64`
`65`	`65`	`conda {`
`66`		`- process.conda = "environment-conda.yml"`
	`66`	`+ process.conda = "${projectDir}/environment-conda.yml"`
`67`	`67`	`conda.enabled = true`
`68`	`68`	`}`
`69`	`69`
`@@ -80,7 +80,7 @@ profiles {`
`80`	`80`
`81`	`81`	`slurm_conda {`
`82`	`82`	`process {`
`83`		`- conda = "environment-conda.yml"`
	`83`	`+ conda = "${projectDir}/environment-conda.yml"`
`84`	`84`	`executor = "slurm"`
`85`	`85`	`time = 4.h`
`86`	`86`	`memory = 20.GB`