fix pyproject.toml file with good dependencies

Author: alpae

pyproject.toml

@@ -8,7 +8,7 @@ dynamic = ["version"]
 description = "FastOMA - a package to infer orthology information among proteomes"
 readme = "README.md"
 license = "MIT"
-requires-python = ">=3.8"
+requires-python = ">=3.8,<3.13"   # ete3 incompatible with >=3.13
 authors = [
     { name = "Sina Majidian", email = "sina.majidian@gmail.com" },
     { name = "Adrian Altenhoff", email = "adrian.altenhoff@inf.ethz.ch" }
@@ -20,7 +20,7 @@ dependencies = [
     "lxml >=4.6,<6",
     "omamer ~=2.0",
     "pyham ~=1.1",
-    "numpy <2",   # temporary fix as pytables does not yet work with numpy 2.0
+    "numpy",
     "pyparsing",
     "networkx",
 ]
@@ -60,3 +60,6 @@ include = [
 features = [
     "report",
 ]
+
+[[tool.hatch.envs.hatch-test.matrix]]
+python = ["3.12", "3.11", "3.10", "3.9"]