Skip to content

Commit 2034cde

Browse files
committed
upload modules
1 parent 4c61c1b commit 2034cde

9 files changed

Lines changed: 11306 additions & 0 deletions

File tree

_modules/.DS_Store

6 KB
Binary file not shown.

_modules/circstudio/analysis/cosinor/cosinor.html

Lines changed: 616 additions & 0 deletions
Large diffs are not rendered by default.

_modules/circstudio/analysis/metrics/metrics.html

Lines changed: 2274 additions & 0 deletions
Large diffs are not rendered by default.

_modules/circstudio/analysis/models/math_models.html

Lines changed: 3611 additions & 0 deletions
Large diffs are not rendered by default.

_modules/circstudio/analysis/sleep/diary.html

Lines changed: 762 additions & 0 deletions
Large diffs are not rendered by default.

_modules/circstudio/analysis/sleep/sleep.html

Lines changed: 2306 additions & 0 deletions
Large diffs are not rendered by default.

_modules/circstudio/io/base.html

Lines changed: 538 additions & 0 deletions
Large diffs are not rendered by default.

_modules/circstudio/io/mask.html

Lines changed: 866 additions & 0 deletions
Large diffs are not rendered by default.

_modules/index.html

Lines changed: 333 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,333 @@
1+
2+
<!DOCTYPE html>
3+
4+
5+
<html lang="en" data-content_root="../" >
6+
7+
<head>
8+
<meta charset="utf-8" />
9+
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
10+
<title>Overview: module code &#8212; circStudio documentation</title>
11+
12+
13+
14+
<script data-cfasync="false">
15+
document.documentElement.dataset.mode = localStorage.getItem("mode") || "";
16+
document.documentElement.dataset.theme = localStorage.getItem("theme") || "";
17+
</script>
18+
<!--
19+
this give us a css class that will be invisible only if js is disabled
20+
-->
21+
<noscript>
22+
<style>
23+
.pst-js-only { display: none !important; }
24+
25+
</style>
26+
</noscript>
27+
28+
<!-- Loaded before other Sphinx assets -->
29+
<link href="../_static/styles/theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
30+
<link href="../_static/styles/pydata-sphinx-theme.css?digest=8878045cc6db502f8baf" rel="stylesheet" />
31+
32+
<link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=8f2a1f02" />
33+
<link rel="stylesheet" type="text/css" href="../_static/styles/sphinx-book-theme.css?v=eba8b062" />
34+
<link rel="stylesheet" type="text/css" href="../_static/mystnb.8ecb98da25f57f5357bf6f572d296f466b2cfe2517ffebfabe82451661e28f02.css" />
35+
36+
<!-- So that users can add custom icons -->
37+
<script src="../_static/scripts/fontawesome.js?digest=8878045cc6db502f8baf"></script>
38+
<!-- Pre-loaded scripts that we'll load fully later -->
39+
<link rel="preload" as="script" href="../_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf" />
40+
<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf" />
41+
42+
<script src="../_static/documentation_options.js?v=9eb32ce0"></script>
43+
<script src="../_static/doctools.js?v=fd6eb6e6"></script>
44+
<script src="../_static/sphinx_highlight.js?v=6ffebe34"></script>
45+
<script src="../_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
46+
<script>DOCUMENTATION_OPTIONS.pagename = '_modules/index';</script>
47+
<link rel="index" title="Index" href="../genindex.html" />
48+
<link rel="search" title="Search" href="../search.html" />
49+
<meta name="viewport" content="width=device-width, initial-scale=1"/>
50+
<meta name="docsearch:language" content="en"/>
51+
<meta name="docsearch:version" content="" />
52+
</head>
53+
54+
55+
<body data-bs-spy="scroll" data-bs-target=".bd-toc-nav" data-offset="180" data-bs-root-margin="0px 0px -60%" data-default-mode="">
56+
57+
58+
59+
<div id="pst-skip-link" class="skip-link d-print-none"><a href="#main-content">Skip to main content</a></div>
60+
61+
<div id="pst-scroll-pixel-helper"></div>
62+
63+
<button type="button" class="btn rounded-pill" id="pst-back-to-top">
64+
<i class="fa-solid fa-arrow-up"></i>Back to top</button>
65+
66+
67+
<dialog id="pst-search-dialog">
68+
69+
<form class="bd-search d-flex align-items-center"
70+
action="../search.html"
71+
method="get">
72+
<i class="fa-solid fa-magnifying-glass"></i>
73+
<input type="search"
74+
class="form-control"
75+
name="q"
76+
placeholder="Search..."
77+
aria-label="Search..."
78+
autocomplete="off"
79+
autocorrect="off"
80+
autocapitalize="off"
81+
spellcheck="false"/>
82+
<span class="search-button__kbd-shortcut"><kbd class="kbd-shortcut__modifier">Ctrl</kbd>+<kbd>K</kbd></span>
83+
</form>
84+
</dialog>
85+
86+
<div class="pst-async-banner-revealer d-none">
87+
<aside id="bd-header-version-warning" class="d-none d-print-none" aria-label="Version warning"></aside>
88+
</div>
89+
90+
91+
<header class="bd-header navbar navbar-expand-lg bd-navbar d-print-none">
92+
</header>
93+
94+
95+
<div class="bd-container">
96+
<div class="bd-container__inner bd-page-width">
97+
98+
99+
100+
101+
102+
<dialog id="pst-primary-sidebar-modal"></dialog>
103+
<div id="pst-primary-sidebar" class="bd-sidebar-primary bd-sidebar">
104+
105+
106+
107+
<div class="sidebar-header-items sidebar-primary__section">
108+
109+
110+
111+
112+
</div>
113+
114+
<div class="sidebar-primary-items__start sidebar-primary__section">
115+
<div class="sidebar-primary-item">
116+
117+
118+
119+
120+
121+
<a class="navbar-brand logo" href="../index.html">
122+
123+
124+
125+
126+
127+
128+
<p class="title logo__title">circStudio documentation</p>
129+
130+
</a></div>
131+
<div class="sidebar-primary-item">
132+
133+
<button class="btn search-button-field search-button__button pst-js-only" title="Search" aria-label="Search" data-bs-placement="bottom" data-bs-toggle="tooltip">
134+
<i class="fa-solid fa-magnifying-glass"></i>
135+
<span class="search-button__default-text">Search</span>
136+
<span class="search-button__kbd-shortcut"><kbd class="kbd-shortcut__modifier">Ctrl</kbd>+<kbd class="kbd-shortcut__modifier">K</kbd></span>
137+
</button></div>
138+
<div class="sidebar-primary-item"><nav class="bd-links bd-docs-nav" aria-label="Main">
139+
<div class="bd-toc-item navbar-nav active">
140+
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Contents:</span></p>
141+
<ul class="nav bd-sidenav">
142+
<li class="toctree-l1"><a class="reference internal" href="../tutorial_0.html">Quick setup</a></li>
143+
<li class="toctree-l1"><a class="reference internal" href="../tutorial_1.html">Opening and processing actigraphy data</a></li>
144+
<li class="toctree-l1"><a class="reference internal" href="../tutorial_2.html">Preprocessing actigraphy data</a></li>
145+
<li class="toctree-l1"><a class="reference internal" href="../tutorial_3.html">Calculating common activity and light metrics</a></li>
146+
147+
<li class="toctree-l1"><a class="reference internal" href="../tutorial_4.html">Mathematical models of circadian rhythms using light intensity data</a></li>
148+
<li class="toctree-l1"><a class="reference internal" href="../tutorial_5.html">Single-component cosinor</a></li>
149+
<li class="toctree-l1"><a class="reference internal" href="../tutorial_6.html">Singular Spectrum Analysis (SSA)</a></li>
150+
<li class="toctree-l1"><a class="reference internal" href="../tutorial_7.html">(Multi-fractal)Detrended fluctuation analysis</a></li>
151+
<li class="toctree-l1"><a class="reference internal" href="../tutorial_8.html">Functional Linear Modelling (FLM)</a></li>
152+
<li class="toctree-l1"><a class="reference internal" href="../api.html">API Reference</a></li>
153+
154+
155+
156+
157+
158+
</ul>
159+
160+
</div>
161+
</nav></div>
162+
</div>
163+
164+
165+
<div class="sidebar-primary-items__end sidebar-primary__section">
166+
<div class="sidebar-primary-item">
167+
<div id="ethical-ad-placement"
168+
class="flat"
169+
data-ea-publisher="readthedocs"
170+
data-ea-type="readthedocs-sidebar"
171+
data-ea-manual="true">
172+
</div></div>
173+
</div>
174+
175+
176+
</div>
177+
178+
<main id="main-content" class="bd-main" role="main">
179+
180+
181+
182+
<div class="sbt-scroll-pixel-helper"></div>
183+
184+
<div class="bd-content">
185+
<div class="bd-article-container">
186+
187+
<div class="bd-header-article d-print-none">
188+
<div class="header-article-items header-article__inner">
189+
190+
<div class="header-article-items__start">
191+
192+
<div class="header-article-item"><button class="sidebar-toggle primary-toggle btn btn-sm" title="Toggle primary sidebar" data-bs-placement="bottom" data-bs-toggle="tooltip">
193+
<span class="fa-solid fa-bars"></span>
194+
</button></div>
195+
196+
</div>
197+
198+
199+
<div class="header-article-items__end">
200+
201+
<div class="header-article-item">
202+
203+
<div class="article-header-buttons">
204+
205+
206+
207+
<button onclick="toggleFullScreen()"
208+
class="btn btn-sm btn-fullscreen-button"
209+
title="Fullscreen mode"
210+
data-bs-placement="bottom" data-bs-toggle="tooltip"
211+
>
212+
213+
214+
<span class="btn__icon-container">
215+
<i class="fas fa-expand"></i>
216+
</span>
217+
218+
</button>
219+
220+
221+
222+
<button class="btn btn-sm nav-link pst-navbar-icon theme-switch-button pst-js-only" aria-label="Color mode" data-bs-title="Color mode" data-bs-placement="bottom" data-bs-toggle="tooltip">
223+
<i class="theme-switch fa-solid fa-sun fa-lg" data-mode="light" title="Light"></i>
224+
<i class="theme-switch fa-solid fa-moon fa-lg" data-mode="dark" title="Dark"></i>
225+
<i class="theme-switch fa-solid fa-circle-half-stroke fa-lg" data-mode="auto" title="System Settings"></i>
226+
</button>
227+
228+
229+
<button class="btn btn-sm pst-navbar-icon search-button search-button__button pst-js-only" title="Search" aria-label="Search" data-bs-placement="bottom" data-bs-toggle="tooltip">
230+
<i class="fa-solid fa-magnifying-glass fa-lg"></i>
231+
</button>
232+
233+
</div></div>
234+
235+
</div>
236+
237+
</div>
238+
</div>
239+
240+
241+
242+
<div id="jb-print-docs-body" class="onlyprint">
243+
<h1></h1>
244+
<!-- Table of contents -->
245+
<div id="print-main-content">
246+
<div id="jb-print-toc">
247+
248+
</div>
249+
</div>
250+
</div>
251+
252+
253+
254+
<div id="searchbox"></div>
255+
<article class="bd-article">
256+
257+
<h1>All modules for which code is available</h1>
258+
<ul><li><a href="circstudio/analysis/cosinor/cosinor.html">circstudio.analysis.cosinor.cosinor</a></li>
259+
<li><a href="circstudio/analysis/metrics/metrics.html">circstudio.analysis.metrics.metrics</a></li>
260+
<li><a href="circstudio/analysis/models/math_models.html">circstudio.analysis.models.math_models</a></li>
261+
<li><a href="circstudio/analysis/sleep/diary.html">circstudio.analysis.sleep.diary</a></li>
262+
<li><a href="circstudio/analysis/sleep/sleep.html">circstudio.analysis.sleep.sleep</a></li>
263+
<li><a href="circstudio/io/base.html">circstudio.io.base</a></li>
264+
<li><a href="circstudio/io/mask.html">circstudio.io.mask</a></li>
265+
</ul>
266+
267+
</article>
268+
269+
270+
271+
272+
273+
274+
<footer class="prev-next-footer d-print-none">
275+
276+
<div class="prev-next-area">
277+
</div>
278+
</footer>
279+
280+
</div>
281+
282+
283+
284+
285+
</div>
286+
<footer class="bd-footer-content">
287+
288+
<div class="bd-footer-content__inner container">
289+
290+
<div class="footer-item">
291+
292+
<p class="component-author">
293+
By Daniel Marques
294+
</p>
295+
296+
</div>
297+
298+
<div class="footer-item">
299+
300+
301+
<p class="copyright">
302+
303+
© Copyright 2025, Daniel Marques | Nuno Morais Lab and Cátia Reis.
304+
<br/>
305+
306+
</p>
307+
308+
</div>
309+
310+
<div class="footer-item">
311+
312+
</div>
313+
314+
<div class="footer-item">
315+
316+
</div>
317+
318+
</div>
319+
</footer>
320+
321+
322+
</main>
323+
</div>
324+
</div>
325+
326+
<!-- Scripts loaded after <body> so the DOM is not blocked -->
327+
<script defer src="../_static/scripts/bootstrap.js?digest=8878045cc6db502f8baf"></script>
328+
<script defer src="../_static/scripts/pydata-sphinx-theme.js?digest=8878045cc6db502f8baf"></script>
329+
330+
<footer class="bd-footer">
331+
</footer>
332+
</body>
333+
</html>

0 commit comments

Comments
 (0)