move python scripts to main folder #159
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| name: Bioconductor Check | |
| on: | |
| push: | |
| branches: [main, default] | |
| pull_request: | |
| branches: [main, default] | |
| release: | |
| types: [published] | |
| branches: [main, default] | |
| workflow_dispatch: | |
| branches: [main, default] | |
| jobs: | |
| bioccheck: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| r-version: ['4.5.0'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up R ${{ matrix.r-version }} | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r-version }} | |
| - name: Install package dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: rcmdcheck | |
| needs: check | |
| - name: Install BiocManager | |
| run: Rscript -e 'install.packages("BiocManager", repos="https://cloud.r-project.org")' | |
| - name: Install BiocCheck | |
| run: Rscript -e 'BiocManager::install("BiocCheck")' | |
| - name: Run BiocCheck | |
| run: BiocCheck::BiocCheck(".", quit_with_status=TRUE) | |
| shell: Rscript {0} |