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Author: ritamtbsilva

404.html

@@ -1417,7 +1417,7 @@ PlotScores(data = counts_example,
 
 ``` r
 sessionInfo()
-#> R version 4.5.2 (2025-10-31)
+#> R version 4.5.3 (2026-03-11)
 #> Platform: x86_64-pc-linux-gnu
 #> Running under: Ubuntu 24.04.3 LTS
 #> 
@@ -1438,38 +1438,38 @@ sessionInfo()
 #> [1] stats     graphics  grDevices utils     datasets  methods   base     
 #> 
 #> other attached packages:
-#> [1] markeR_1.1.1
+#> [1] markeR_1.1.2
 #> 
 #> loaded via a namespace (and not attached):
 #>   [1] pROC_1.19.0.1         gridExtra_2.3         rlang_1.1.7          
 #>   [4] magrittr_2.0.4        clue_0.3-67           GetoptLong_1.1.0     
-#>   [7] msigdbr_25.1.1        otel_0.2.0            matrixStats_1.5.0    
-#>  [10] compiler_4.5.2        mgcv_1.9-3            png_0.1-8            
+#>   [7] msigdbr_26.1.0        otel_0.2.0            matrixStats_1.5.0    
+#>  [10] compiler_4.5.3        mgcv_1.9-4            png_0.1-8            
 #>  [13] systemfonts_1.3.2     vctrs_0.7.1           reshape2_1.4.5       
 #>  [16] stringr_1.6.0         pkgconfig_2.0.3       shape_1.4.6.1        
 #>  [19] crayon_1.5.3          fastmap_1.2.0         magick_2.9.1         
 #>  [22] backports_1.5.0       labeling_0.4.3        effectsize_1.0.2     
 #>  [25] rmarkdown_2.30        ragg_1.5.1            purrr_1.2.1          
 #>  [28] xfun_0.56             cachem_1.1.0          jsonlite_2.0.0       
-#>  [31] BiocParallel_1.44.0   broom_1.0.12          parallel_4.5.2       
-#>  [34] cluster_2.1.8.1       R6_2.6.1              stringi_1.8.7        
+#>  [31] BiocParallel_1.44.0   broom_1.0.12          parallel_4.5.3       
+#>  [34] cluster_2.1.8.2       R6_2.6.1              stringi_1.8.7        
 #>  [37] bslib_0.10.0          RColorBrewer_1.1-3    limma_3.66.0         
 #>  [40] car_3.1-5             jquerylib_0.1.4       Rcpp_1.1.1           
 #>  [43] assertthat_0.2.1      iterators_1.0.14      knitr_1.51           
-#>  [46] parameters_0.28.3     IRanges_2.44.0        splines_4.5.2        
+#>  [46] parameters_0.28.3     IRanges_2.44.0        splines_4.5.3        
 #>  [49] Matrix_1.7-4          tidyselect_1.2.1      abind_1.4-8          
 #>  [52] yaml_2.3.12           doParallel_1.0.17     codetools_0.2-20     
-#>  [55] curl_7.0.0            plyr_1.8.9            lattice_0.22-7       
+#>  [55] curl_7.0.0            plyr_1.8.9            lattice_0.22-9       
 #>  [58] tibble_3.3.1          withr_3.0.2           bayestestR_0.17.0    
 #>  [61] S7_0.2.1              evaluate_1.0.5        desc_1.4.3           
 #>  [64] circlize_0.4.17       pillar_1.11.1         ggpubr_0.6.3         
-#>  [67] carData_3.0-6         foreach_1.5.2         stats4_4.5.2         
+#>  [67] carData_3.0-6         foreach_1.5.2         stats4_4.5.3         
 #>  [70] insight_1.4.6         generics_0.1.4        S4Vectors_0.48.0     
 #>  [73] ggplot2_4.0.2         scales_1.4.0          glue_1.8.0           
-#>  [76] tools_4.5.2           data.table_1.18.2.1   fgsea_1.36.2         
+#>  [76] tools_4.5.3           data.table_1.18.2.1   fgsea_1.36.2         
 #>  [79] locfit_1.5-9.12       ggsignif_0.6.4        babelgene_22.9       
 #>  [82] fs_1.6.7              fastmatch_1.1-8       cowplot_1.2.0        
-#>  [85] grid_4.5.2            tidyr_1.3.2           datawizard_1.3.0     
+#>  [85] grid_4.5.3            tidyr_1.3.2           datawizard_1.3.0     
 #>  [88] edgeR_4.8.2           colorspace_2.1-2      nlme_3.1-168         
 #>  [91] Formula_1.2-5         cli_3.6.5             textshaping_1.0.5    
 #>  [94] ComplexHeatmap_2.26.1 dplyr_1.2.0           gtable_0.3.6