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MOM_input.yaml
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4027 lines (4018 loc) · 148 KB
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# This file includes CESM defaults for MOM6 parameters. During compile time,
# this file is read to generate MOM_input file depending on the case settings.
### Warning: ###
# This file is intended to be edited by MOM6+CESM developers.
# For customizing cases, users should add their "parameter=value" pairs
# to user_nl_mom or add their complete versions of input files (e.g.
# MOM_input, diag_table, etc.) to SourceMods/src.mom directory.
### Syntax ###
# Module_name:
# Param_name:
# description: "..."
# datatype: ...
# value: ...
### Notes to developers ###
# * To maintain the precision of double-precision floating-poing numbers,
# make sure to specify the values (not datatypes) as strings, e.g,:
# value: "300.3003003003003"
# * Use $ sign followed by enclosing curly brackets to designate keywords
# to be replaced by case-specific values, e.g., ${DIN_LOC_ROOT}.
# * Expandable string variables are added quotation marks if they are NOT
# specified with curly brackets. i.e.,
# ${VAR} -> str_val
# $VAR -> "str_val"
# =============================================================================
---
Global:
INPUTDIR:
description: |
"The directory in which input files are found."
datatype: string
value: ${DIN_LOC_ROOT}/ocn/mom/${OCN_GRID}
TRIPOLAR_N:
description: |
"[Boolean] default = False
Use tripolar connectivity at the northern edge of the
domain. With TRIPOLAR_N, NIGLOBAL must be even."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
$OCN_GRID == "tx0.25v1": True
else: False
NIHALO:
description: |
"default = 2
The number of halo points on each side in the
x-direction. With STATIC_MEMORY_ this is set as NIHALO_
in MOM_memory.h at compile time; without STATIC_MEMORY_
the default is NIHALO_ in MOM_memory.h (if defined) or 2."
datatype: integer
value: 4
NJHALO:
description: |
"default = 2
The number of halo points on each side in the
y-direction. With STATIC_MEMORY_ this is set as NJHALO_
in MOM_memory.h at compile time; without STATIC_MEMORY_
the default is NJHALO_ in MOM_memory.h (if defined) or 2."
datatype: integer
value: 4
NIGLOBAL:
description: |
"The total number of thickness grid points in the
x-direction in the physical domain. With STATIC_MEMORY_
this is set in MOM_memory.h at compile time."
datatype: integer
value:
$OCN_GRID == "tx2_3v2": 540
$OCN_GRID == "tx0.25v1": 1440
$OCN_GRID == "MISOMIP": 402
NJGLOBAL:
description: |
"The total number of thickness grid points in the
y-direction in the physical domain. With STATIC_MEMORY_
this is set in MOM_memory.h at compile time.
The number of processors in the x-direction. With
STATIC_MEMORY_ this is set in MOM_memory.h at compile time.
The number of processors in the x-direction. With
STATIC_MEMORY_ this is set in MOM_memory.h at compile time.
The processor layout that was acutally used."
datatype: integer
value:
$OCN_GRID == "tx2_3v2": 480
$OCN_GRID == "tx0.25v1": 1080
$OCN_GRID == "MISOMIP": 40
NK:
description: |
"[nondim]
The number of model layers."
datatype: integer
units: nondim
value:
$MOM6_VERTICAL_GRID == "zstar_65L": 65
$MOM6_VERTICAL_GRID in ["hycom1", "zstar_75L"]: 75
$MOM6_VERTICAL_GRID == "sigma_shelf_zstar": 36
USE_LEGACY_DIABATIC_DRIVER:
description: |
"[Boolean] default = True
If true, use the a legacy version of the diabatic subroutine.
This is temporary and is needed avoid change in answers."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": False
HREF_FOR_MLD:
description: |
"[m] default = 0.0
Reference depth used to calculate the potential density used to find the mixed
layer depth based on a delta rho = 0.03 kg/m3."
datatype: real
units: m
value:
$OCN_GRID == "tx2_3v2": 10.0
USE_REGRIDDING:
description: |
"[Boolean] default = False
If True, use the ALE algorithm (regridding/remapping).
If False, use the layered isopycnal algorithm."
datatype: logical
units: Boolean
value: True
THICKNESSDIFFUSE:
description: |
"[Boolean] default = False
If true, interfaces or isopycnal surfaces are diffused,
depending on the value of FULL_THICKNESSDIFFUSE."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
$OCN_GRID == "tx0.25v1": True
THICKNESSDIFFUSE_FIRST:
description: |
"[Boolean] default = False
If true, do thickness diffusion before dynamics.
This is only used if THICKNESSDIFFUSE is true."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
$OCN_GRID == "tx0.25v1": True
DT:
description: |
"[s]
The (baroclinic) dynamics time step. The time-step that
is actually used will be an integer fraction of the
forcing time-step (DT_FORCING in ocean-only mode or the
coupling timestep in coupled mode.)"
datatype: real
units: s
value:
$OCN_GRID == "tx0.25v1": 900.0
$OCN_GRID == "tx2_3v2": 1800
$OCN_GRID == "MISOMIP": 600.0
DT_THERM:
description: |
"[s] default = 3600.0
The thermodynamic and tracer advection time step.
Ideally DT_THERM should be an integer multiple of DT
and less than the forcing or coupling time-step.
By default DT_THERM is set to DT.
The minimum amount of time in seconds between
calculations of depth-space diagnostics. Making this
larger than DT_THERM reduces the performance penalty
of regridding to depth online."
datatype: real
units: s
value:
$OCN_GRID == "MISOMIP": 1800.0
else: >
= ( ( $NCPL_BASE_PERIOD =="decade") * 86400.0 * 3650 +
( $NCPL_BASE_PERIOD =="year") * 86400.0 * 365 +
( $NCPL_BASE_PERIOD =="day") * 86400.0 +
( $NCPL_BASE_PERIOD =="hour") * 3600 ) / $OCN_NCPL
HFREEZE:
description: |
"[m] default = -1.0
If HFREEZE > 0, melt potential will be computed. The actual depth
over which melt potential is computed will be min(HFREEZE, OBLD),
where OBLD is the boundary layer depth. If HFREEZE <= 0 (default),
melt potential will not be computed."
datatype: real
units: m
value:
$OCN_GRID == "tx2_3v2": 10.0
$OCN_GRID == "tx0.25v1": 20.0
DTBT_RESET_PERIOD:
description: |
"[s] default = 7200.0
The period between recalculations of DTBT (if DTBT <= 0).
If DTBT_RESET_PERIOD is negative, DTBT is set based
only on information available at initialization. If 0,
DTBT will be set every dynamics time step. The default
is set by DT_THERM. This is only used if SPLIT is true."
datatype: real
units: s
value:
$OCN_GRID == "tx2_3v2": 7200.0
$OCN_GRID == "tx0.25v1": 3600.0
else: 0.0
FRAZIL:
description: |
"[Boolean] default = False
If true, water freezes if it gets too cold, and the
the accumulated heat deficit is returned in the
surface state. FRAZIL is only used if
ENABLE_THERMODYNAMICS is true.
If true, apply geothermal heating."
datatype: logical
units: Boolean
value: True
MIN_SALINITY:
description: |
"[PPT] default = 0.01
The minimum value of salinity when BOUND_SALINITY=True. The default is 0.01
for backward compatibility but ideally should be 0."
datatype: real
units: PPT
value:
$COMP_ATM == "cam": 1.0e-6
else: 0.0
BOUND_SALINITY:
description: |
"[Boolean] default = False
If true, limit salinity to being positive. (The sea-ice
model may ask for more salt than is available and
drive the salinity negative otherwise.)"
datatype: logical
units: Boolean
value: True
C_P:
description: |
"[J kg-1 K-1] default = 3991.86795711963
The heat capacity of sea water, approximated as a
constant. This is only used if ENABLE_THERMODYNAMICS is
true. The default value is from the TEOS-10 definition
of conservative temperature."
datatype: real
units: J kg-1 K-1
value:
$OCN_GRID == "tx2_3v2": 3992.0
$OCN_GRID == "tx0.25v1": 3992.0
$OCN_GRID == "MISOMIP": 3974.0
USE_PSURF_IN_EOS:
description: |
"[Boolean] default = True
If true, always include the surface pressure contributions in equation of
state calculations."
datatype: logical
units: Boolean
value: True
CHECK_BAD_SURFACE_VALS:
description: |
"[Boolean] default = False
If true, check the surface state for ridiculous values."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
$OCN_GRID == "tx0.25v1": True
SAVE_INITIAL_CONDS:
description: |
"[Boolean] default = False
If true, write the initial conditions to a file given
by IC_OUTPUT_FILE."
datatype: logical
units: Boolean
value: = $CONTINUE_RUN == False
GRID_ROTATION_ANGLE_BUGS:
description: |
"[Boolean] default = True
If true, use an older algorithm to calculate the sine and
cosines needed rotate between grid-oriented directions and
true north and east. Differences arise at the tripolar fold."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": False
$OCN_GRID == "tx0.25v1": False
EQN_OF_STATE:
description: |
"default = WRIGHT_FULL
EQN_OF_STATE determines which ocean equation of state should be used."
datatype: string
value:
$OCN_GRID == "MISOMIP": "LINEAR"
else: "WRIGHT_FULL"
DTFREEZE_DP:
description: |
"[deg C Pa-1] default = 0.0
When TFREEZE_FORM=LINEAR,
this is the derivative of the freezing potential
temperature with pressure."
datatype: real
units: deg C Pa-1
value:
$OCN_GRID == "tx2_3v2": -7.75E-08
$OCN_GRID == "tx0.25v1": -7.75E-08
$OCN_GRID == "MISOMIP": -7.53E-08
USE_IDEAL_AGE_TRACER:
description: |
"[Boolean] default = False
If true, use the ideal_age_example tracer package."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
$OCN_GRID == "tx0.25v1": True
USE_CFC_CAP:
description: |
"[Boolean] default = False
If true, use the MOM_CFC_cap tracer package."
datatype: logical
units: Boolean
value: False
CFC_BC_FILE:
description: |
"The file in which the CFC-11 and CFC-12 atm concentrations can be found (units
must be parts per trillion)."
datatype: string
value: "${DIN_LOC_ROOT}/ocn/mom/grid_indpt/cfc_atm_20230310.nc"
USE_MARBL_TRACERS:
description: |
"[Boolean] default = False
If true, use the MARBL tracer package."
datatype: logical
units: Boolean
value:
'"ABIO_DIC_ON=TRUE" in $MARBL_TRACER_OPTS or "BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS': True
else: False
MARBL_TRACERS_IC_FILE:
description: |
"Name of file containing initial conditions
for the MARBL tracer package."
datatype: string
value:
$MARBL_CONFIG == "latest": ecosys_jan_IC_omip_latlon_1x1_180W_c250613.nc
$MARBL_CONFIG == "latest+4p2z": ecosys_jan_IC_omip_latlon_1x1_180W_c250613.nc
MARBL_FESEDFLUX_FILE:
description: |
"Name of file containing iron sediment flux
forcing field for the MARBL tracer package."
datatype: string
value:
'"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS and $OCN_GRID == "tx2_3v2"': fesedflux_2024algo_tx2_3v2.c251229.nc
MARBL_FESEDFLUXRED_FILE:
description: |
"Name of file containing iron reducing sediment flux
forcing field for the MARBL tracer package."
datatype: string
value:
'"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS and $OCN_GRID == "tx2_3v2"': fesedfluxRed_2024algo_tx2_3v2.c251229.nc
MARBL_FEVENTFLUX_FILE:
description: |
"Name of file containing iron sediment flux
forcing field for the MARBL tracer package."
datatype: string
value:
'"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS and $OCN_GRID == "tx2_3v2"': feventflux_5gmol_tx2_3v2.c231205.nc
READ_RIV_FLUXES:
description: |
"Use river fluxes provided by RIV_FLUX_FILE."
datatype: logical
value:
'"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS': True
RIV_FLUX_FILE:
description: |
"Name of file containing river fluxes
(added to surface tracer flux in tracer_vertdiff for MARBL tracers)."
datatype: string
value:
'"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS and $OCN_GRID == "tx2_3v2" and $ROF_GRID == "JRA025"': riv_nut.gnews_gnm.rJRA025_to_tx2_3v2_nnsm_e333r100_230415.20240202.nc
'"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS and $OCN_GRID == "tx2_3v2" and $ROF_GRID == "r05"': riv_nut.gnews_gnm.r05_to_tx2_3v2_nnsm_e250r250_230914.20240202.nc
MARBL_D14C_FILE_1:
description: |
"Name of file containing D14C forcing from 30 N to 90 N."
datatype: string
value:
'"ABIO_DIC_ON=TRUE" in $MARBL_TRACER_OPTS': |
${DIN_LOC_ROOT}/ocn/mom/grid_indpt/atm_delta_C14_CMIP6_sector1_global_1850-2015_yearly_v2.0_c240202.nc
MARBL_D14C_FILE_2:
description: |
"Name of file containing D14C forcing from 30 S to 30 N."
datatype: string
value:
'"ABIO_DIC_ON=TRUE" in $MARBL_TRACER_OPTS': |
${DIN_LOC_ROOT}/ocn/mom/grid_indpt/atm_delta_C14_CMIP6_sector2_global_1850-2015_yearly_v2.0_c240202.nc
MARBL_D14C_FILE_3:
description: |
"Name of file containing D14C forcing from 90 S to 30 S."
datatype: string
value:
'"ABIO_DIC_ON=TRUE" in $MARBL_TRACER_OPTS': |
${DIN_LOC_ROOT}/ocn/mom/grid_indpt/atm_delta_C14_CMIP6_sector3_global_1850-2015_yearly_v2.0_c240202.nc
CHL_FROM_FILE:
description: |
"[Boolean] default = True
If true, read chlorophyll from a file. Otherwise MARBL will provide it."
datatype: logical
value:
'"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS': False
ATM_CO2_OPT:
description: |
"default comes from env_run.xml (OCN_CO2_TYPE)
Source of atmospheric CO2 concentration for MARBL.
valid values: constant, prognostic, diagnostic"
datatype: string
value:
'"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS': $OCN_CO2_TYPE
ATM_CO2_CONST:
description: |
"default comes from env_run.xml (CCSM_CO2_PPMV)
Atmospheric CO2 concentration for MARBL [ppm]."
datatype: real
value:
'"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS': $CCSM_CO2_PPMV
ATM_ALT_CO2_OPT:
description: |
"default comes from env_run.xml (OCN_CO2_TYPE)
Source of atmospheric CO2 concentration for MARBL.
valid values: constant, prognostic, diagnostic"
datatype: string
value:
'"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS': $OCN_CO2_TYPE
ATM_ALT_CO2_CONST:
description: |
"default comes from env_run.xml (CCSM_CO2_PPMV)
Alternate atmospheric CO2 concentration for MARBL [ppm]."
datatype: real
value:
'"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS': $CCSM_CO2_PPMV
DUST_RATIO_THRES:
description: |
"Coarse/fine dust ratio threshold."
datatype: real
value:
'"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS and $COMP_ATM == "cam"': 60.0
DUST_RATIO_TO_FE_BIOAVAIL_FRAC:
description: |
"Ratio of dust to iron bioavailability fraction."
datatype: real
value:
'"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS and $COMP_ATM == "cam"': = 1.0 / 170.0
FE_BIOAVAIL_FRAC_OFFSET:
description: |
"Offset for iron bioavailability fraction."
datatype: real
value:
'"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS and $COMP_ATM == "cam"': 0.01
USE_ICE_CATEGORIES:
description: |
"[Boolean] default = False
If true, send multiple ice categories from the coupler to MARBL."
datatype: logical
units: Boolean
value:
'"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS and $ICE_NCAT > 0': True
ICE_NCAT:
description: |
"[Integer] default = value of ICE_NCAT in env_build.xml
If USE_ICE_CATEGORIES is true, this is the number of categories
to send from the coupler to MARBL."
datatype: integer
value:
'"BASE_BIO_ON=TRUE" in $MARBL_TRACER_OPTS': $ICE_NCAT
COORD_CONFIG:
description: |
"This specifies how layers are to be defined:
file - read coordinate information from the file
specified by (COORD_FILE).
linear - linear based on interfaces not layers.
ts_ref - use reference temperature and salinity
ts_range - use range of temperature and salinity
(T_REF and S_REF) to determine surface density
and GINT calculate internal densities.
gprime - use reference density (RHO_0) for surface
density and GINT calculate internal densities.
ts_profile - use temperature and salinity profiles
(read from COORD_FILE) to set layer densities.
USER - call a user modified routine.
The file from which the coordinate densities are read."
datatype: string
value:
$OCN_GRID == "tx0.25v1": "file"
$OCN_GRID == "MISOMIP": "linear"
REMAP_UV_USING_OLD_ALG:
description: |
"[Boolean] default = True
If true, uses the old remapping-via-a-delta-z method for remapping u and v. If
false, uses the new method that remaps between grids described by an old and
new thickness."
datatype: logical
units: Boolean
value: False
COORD_FILE:
description: |
"The file from which the coordinate densities are read."
datatype: string
value:
$OCN_GRID == "tx0.25v1": "layer_coord.nc"
BOUNDARY_EXTRAPOLATION:
description: |
"[Boolean] default = False
When defined, a proper high-order reconstruction
scheme is used within boundary cells rather
than PCM. E.g., if PPM is used for remapping, a
PPM reconstruction will also be used within
boundary cells."
datatype: logical
units: Boolean
value:
$MOM6_VERTICAL_GRID == "hycom1": True
GRID_CONFIG:
description: |
"A character string that determines the method for
defining the horizontal grid. Current options are:
mosaic - read the grid from a mosaic (supergrid)
file set by GRID_FILE.
cartesian - use a (flat) Cartesian grid.
spherical - use a simple spherical grid.
mercator - use a Mercator spherical grid."
datatype: string
value:
$OCN_GRID == "MISOMIP": "cartesian"
else: "mosaic"
GRID_FILE:
description: |
"Name of the file from which to read horizontal grid data."
datatype: string
value:
$OCN_GRID == "tx2_3v2": "ocean_hgrid_221123.nc"
$OCN_GRID == "tx0.25v1": "ocean_hgrid.nc"
USE_TRIPOLAR_GEOLONB_BUG:
description: |
"[Boolean] default = True
If true, use older code that incorrectly sets the longitude
in some points along the tripolar fold to be off by 360 degrees."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": False
$OCN_GRID == "tx0.25v1": False
RAD_EARTH:
description: |
"[m] default = 6.378E+06
The radius of the Earth."
datatype: real
units: m
value: 6.37122E+06
TOPO_CONFIG:
description: |
"This specifies how bathymetry is specified:
file - read bathymetric information from the file
specified by (TOPO_FILE).
flat - flat bottom set to MAXIMUM_DEPTH.
bowl - an analytically specified bowl-shaped basin
ranging between MAXIMUM_DEPTH and MINIMUM_DEPTH.
spoon - a similar shape to 'bowl', but with an vertical
wall at the southern face.
halfpipe - a zonally uniform channel with a half-sine
profile in the meridional direction.
benchmark - use the benchmark test case topography.
DOME - use a slope and channel configuration for the
DOME sill-overflow test case.
DOME2D - use a shelf and slope configuration for the
DOME2D gravity current/overflow test case.
seamount - Gaussian bump for spontaneous motion test case.
USER - call a user modified routine."
datatype: string
value:
$OCN_GRID == "MISOMIP": "ISOMIP"
else: "file"
TOPO_FILE:
description: |
"default = 'topog.nc'
The file from which the bathymetry is read."
datatype: string
value:
$OCN_GRID == "tx2_3v2": "ocean_topo_tx2_3v2_240501.nc"
$OCN_GRID == "tx0.25v1": "ocean_topog.nc"
TOPO_EDITS_FILE:
description: |
"default = ''
The file from which to read a list of i,j,z topography overrides."
datatype: string
value:
$OCN_GRID == "tx2_3v2": "topo_edits_tx2_3v2_250107.nc"
$OCN_GRID == "tx0.25v1": "All_edits.nc"
MAXIMUM_DEPTH:
description: |
"[m]
The maximum depth of the ocean."
datatype: real
units: m
value:
$OCN_GRID == "tx2_3v2": 6000.0
$OCN_GRID == "tx0.25v1": 6500.0
$OCN_GRID == "MISOMIP": 720.0
MINIMUM_DEPTH:
description: |
"[m] default = 0.0
If MASKING_DEPTH is unspecified, then anything shallower than
MINIMUM_DEPTH is assumed to be land and all fluxes are masked out.
If MASKING_DEPTH is specified, then all depths shallower than
MINIMUM_DEPTH but depper than MASKING_DEPTH are rounded to
MINIMUM_DEPTH."
datatype: real
units: m
value:
$OCN_GRID == "tx2_3v2": 9.5
$OCN_GRID == "tx0.25v1": 9.5
MASKING_DEPTH:
description: |
"[m] default = -9999.0
The depth below which to mask points as land points, for which all
fluxes are zeroed out. MASKING_DEPTH is ignored if negative."
datatype: real
units: m
value:
$OCN_GRID == "tx2_3v2": 0.0
$OCN_GRID == "tx0.25v1": 0.0
REMAPPING_SCHEME:
description: |
"default = 'PLM'
This sets the reconstruction scheme used
for vertical remapping for all variables.
It can be one of the following schemes:
PCM (1st-order accurate)
PLM (2nd-order accurate)
PPM_H4 (3rd-order accurate)
PPM_IH4 (3rd-order accurate)
PQM_IH4IH3 (4th-order accurate)
PQM_IH6IH5 (5th-order accurate)"
datatype: string
value: "PPM_CW"
REMAP_VEL_CONSERVE_KE:
description: |
"[Boolean] default = False
If true, a correction is applied to the baroclinic component of velocity after
remapping so that total KE is conserved. KE may not be conserved when
(CS%BBL_h_vel_mask > 0.0) .and. (CS%h_vel_mask > 0.0)"
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
REMAPPING_USE_OM4_SUBCELLS:
description: |
"[Boolean] default = True
This selects the remapping algorithm used in OM4 that does not use the full
reconstruction for the top- and lower-most sub-layers. Instead, it assumes
they are always vanished (which is untrue) and uses only their edge values.
It is recommended to set this option to false."
datatype: bool
units: none
value:
$OCN_GRID == "tx2_3v2": False
INIT_LAYERS_FROM_Z_FILE:
description: |
"[Boolean] default = False
If true, intialize the layer thicknesses, temperatures,
and salnities from a Z-space file on a latitude-
longitude grid."
datatype: logical
units: Boolean
value:
$RUN_TYPE != "hybrid" and $OCN_GRID in ["tx2_3v2", "tx0.25v1"]:
True
else:
False
TEMP_SALT_Z_INIT_FILE:
description: |
"default = 'temp_salt_z.nc'
The name of the z-space input file used to initialize
the layer thicknesses, temperatures and salinities."
datatype: string
value:
$OCN_GRID == "tx2_3v2": "woa18_04_initial_conditions.nc"
$OCN_GRID == "tx0.25v1": "MOM6_IC_TS.nc"
Z_INIT_FILE_PTEMP_VAR:
description: |
"default = 'ptemp'
The name of the potential temperature variable in
TEMP_SALT_Z_INIT_FILE."
datatype: string
value:
$OCN_GRID == "tx2_3v2": "theta0"
$OCN_GRID == "tx0.25v1": "temp"
Z_INIT_FILE_SALT_VAR:
description: |
"default = 'salt'
The name of the salinity variable in
TEMP_SALT_Z_INIT_FILE."
datatype: string
value:
$OCN_GRID == "tx2_3v2": "s_an"
Z_INIT_REMAP_OLD_ALG:
description: |
"[Boolean] default = True
If false, uses the preferred remapping algorithm for initialization. If true,
use an older, less robust algorithm for remapping."
datatype: logical
units: Boolean
value: False
Z_INIT_REMAP_GENERAL:
description: |
"[Boolean] default = False
If false, only initializes to z* coordinates. If true, allows initialization
directly to general coordinates."
datatype: logical
units: Boolean
value:
$MOM6_VERTICAL_GRID == "hycom1" and $OCN_GRID in ["tx2_3v2"]: True
USE_VARIABLE_MIXING:
description: |
"[Boolean] default = False
If true, the variable mixing code will be called. This
allows diagnostics to be created even if the scheme is
not used. If KHTR_SLOPE_CFF>0 or KhTh_Slope_Cff>0,
this is set to true regardless of what is in the
parameter file."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
$OCN_GRID == "tx0.25v1": True
RESOLN_SCALED_KH:
description: |
"[Boolean] default = False
If true, the Laplacian lateral viscosity is scaled away
when the first baroclinic deformation radius is well
resolved."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
$OCN_GRID == "tx0.25v1": True
KHTH_SLOPE_CFF:
description: |
"[nondim] default = 0.0
The nondimensional coefficient in the Visbeck formula for the interface depth
diffusivity"
datatype: real
units: nondim
value:
$OCN_GRID == "tx2_3v2": 0.01
DEPTH_SCALED_KHTH:
description: |
"[Boolean] default = False
If true, KHTH is scaled away when the depth is shallower
than a reference depth: KHTH = MIN(1,H/H0)**N * KHTH,
where H0 is a reference depth, controlled via
DEPTH_SCALED_KHTH_H0, and theexponent (N) is
controlled via DEPTH_SCALED_KHTH_EXP."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
$OCN_GRID == "tx0.25v1": False
DEPTH_SCALED_KHTH_H0:
description: |
"[m] default = 1000.0
The depth above which KHTH is scaled away."
datatype: real
units: nondim
value:
$OCN_GRID == "tx2_3v2": 500.0
KHTR_SLOPE_CFF:
description: |
"[nondim] default = 0.0
The nondimensional coefficient in the Visbeck formula
for the epipycnal tracer diffusivity"
datatype: real
units: nondim
value:
$OCN_GRID == "tx0.25v1": 0.25
KHTH_USE_EBT_STRUCT:
description: |
"[Boolean] default = False
If true, uses the equivalent barotropic structure
as the vertical structure of thickness diffusivity."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
RESOLN_SCALED_KHTH:
description: |
"[Boolean] default = False
If true, the interface depth diffusivity is scaled away
when the first baroclinic deformation radius is well
resolved."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
$OCN_GRID == "tx0.25v1": True
RESOLN_SCALED_KHTR:
description: |
"[Boolean] default = False
If true, the epipycnal tracer diffusivity is scaled away when the first
baroclinic deformation radius is well resolved."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
USE_GM_WORK_BUG:
description: |
"[Boolean] default = True
If true, compute the top-layer work tendency on the u-grid with the incorrect
sign, for legacy reproducibility."
datatype: logical
units: Boolean
value: False
USE_STORED_SLOPES:
description: |
"[Boolean] default = False
If true, the isopycnal slopes are calculated once and
stored for re-use. This uses more memory but avoids calling
the equation of state more times than should be necessary."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
$OCN_GRID == "tx0.25v1": True
USE_STANLEY_ISO:
description: |
"[Boolean] default = False
If true, turn on Stanley SGS T variance parameterization in isopycnal slope code."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": False
ETA_TOLERANCE:
description: |
"[m] default = 3.15E-09
The tolerance for the differences between the
barotropic and baroclinic estimates of the sea surface
height due to the fluxes through each face. The total
tolerance for SSH is 4 times this value. The default
is 0.5*NK*ANGSTROM, and this should not be set less x
than about 10^-15*MAXIMUM_DEPTH."
datatype: real
units: m
value:
$OCN_GRID == "MISOMIP": 1.0E-12
else: 1.0E-06
ETA_TOLERANCE_AUX:
description: |
"[m] default = 1.0E-06
The tolerance for free-surface height discrepancies
between the barotropic solution and the sum of the
layer thicknesses when calculating the auxiliary
corrected velocities. By default, this is the same as
ETA_TOLERANCE, but can be made larger for efficiency."
datatype: real
units: m
value:
$OCN_GRID == "tx0.25v1": 0.001
USE_NEUTRAL_DIFFUSION:
description: |
"[Boolean] default = False
If true, enables the neutral diffusion module."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
NDIFF_INTERIOR_ONLY:
description: |
"[Boolean] default = False
If true, only applies neutral diffusion in the ocean interior. That is, the
algorithm will exclude the surface and bottomboundary layers."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
NDIFF_TAPERING:
description: |
"[Boolean] default = False
If true, neutral diffusion linearly decays to zero within a transition
zone defined using boundary layer depths. Only applicable when
NDIFF_INTERIOR_ONLY = True."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
USE_HORIZONTAL_BOUNDARY_DIFFUSION:
description: |
"[Boolean] default = False
If true, enables the horizontal boundary tracer's diffusion module."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
HBD_LINEAR_TRANSITION:
description: |
"[Boolean] default = False
If True, apply a linear transition at the base/top of the boundary.
The flux will be fully applied at k=k_min and zero at k=k_max."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
SIMPLE_TKE_TO_KD:
description: |
"[Boolean] default = False
If true, uses a simple estimate of Kd/TKE that will
work for arbitrary vertical coordinates. If false,
calculates Kd/TKE and bounds based on exact
energetics/nfor an isopycnal layer-formulation."
datatype: logical
units: Boolean
value:
$OCN_GRID == "tx2_3v2": True
$OCN_GRID == "tx0.25v1": True
REGRIDDING_COORDINATE_MODE:
description: |
"default = 'LAYER'
Coordinate mode for vertical regridding.
Choose among the following possibilities:
LAYER - Isopycnal or stacked shallow water layers
ZSTAR, Z* - stetched geopotential z*
SIGMA_SHELF_ZSTAR - stetched geopotential z* ignoring shelf
SIGMA - terrain following coordinates
RHO - continuous isopycnal
HYCOM1 - HyCOM-like hybrid coordinate
SLIGHT - stretched coordinates above continuous isopycnal
ADAPTIVE - optimize for smooth neutral density surfaces"
datatype: string
value:
$MOM6_VERTICAL_GRID in ["zstar_65L", "zstar_75L"]: "Z*"
$MOM6_VERTICAL_GRID == "hycom1": "HYCOM1"
$MOM6_VERTICAL_GRID == "sigma_shelf_zstar": "SIGMA_SHELF_ZSTAR"
ALE_COORDINATE_CONFIG:
description: |
"default = 'UNIFORM'
Determines how to specify the coordinate
resolution. Valid options are:
PARAM - use the vector-parameter ALE_RESOLUTION
UNIFORM[:N] - uniformly distributed
FILE:string - read from a file. The string specifies
the filename and variable name, separated
by a comma or space, e.g. FILE:lev.nc,dz
or FILE:lev.nc,interfaces=zw
WOA09[:N] - the WOA09 vertical grid (approximately)
FNC1:string - FNC1:dz_min,H_total,power,precision
HYBRID:string - read from a file. The string specifies
the filename and two variable names, separated
by a comma or space, for sigma-2 and dz. e.g.
HYBRID:vgrid.nc,sigma2,dz"
datatype: string
value:
$MOM6_VERTICAL_GRID == "zstar_75L": '"FILE:zstar_75layer_2.5m_248.4m-2024-03-29.nc,dz"'
$MOM6_VERTICAL_GRID == "zstar_65L": '"FILE:vgrid_65L_20200626.nc,dz"'
$MOM6_VERTICAL_GRID == "hycom1" and $OCN_GRID != "tx0.25v1": '"HYBRID:hybrid_75layer_zstar_2.50m-2025-09-12.nc,sigma2,dz"'
$MOM6_VERTICAL_GRID == "hycom1" and $OCN_GRID == "tx0.25v1": '"HYBRID:hycom1_75_800m.nc,sigma2,FNC1:2,4000,4.5,.01"'
REGRID_COMPRESSIBILITY_FRACTION:
description: |
"[not defined] default = 0.0
When interpolating potential density profiles we can add
some artificial compressibility solely to make homogenous
regions appear stratified."
datatype: real
units: not defined
value:
$MOM6_VERTICAL_GRID == "hycom1": 0.0
MAXIMUM_INT_DEPTH_CONFIG:
description: |
"default = 'NONE'
Determines how to specify the maximum interface depths.
Valid options are:
NONE - there are no maximum interface depths
PARAM - use the vector-parameter MAXIMUM_INTERFACE_DEPTHS
FILE:string - read from a file. The string specifies
the filename and variable name, separated
by a comma or space, e.g. FILE:lev.nc,Z
FNC1:string - FNC1:dz_min,H_total,power,precision
The list of maximum depths for each interface."
datatype: string
value:
$MOM6_VERTICAL_GRID == "hycom1" and $OCN_GRID in ["tx2_3v2"]: |
'"FILE:${DIN_LOC_ROOT}/ocn/mom/tx2_3v2/lev-2025-09-12.nc,Z"'
$MOM6_VERTICAL_GRID == "hycom1" and $OCN_GRID == "tx0.25v1": '"FNC1:5,8000.0,1.0,.01"'
MAX_LAYER_THICKNESS_CONFIG:
description: |
"default = 'NONE'
Determines how to specify the maximum layer thicknesses.
Valid options are:
NONE - there are no maximum layer thicknesses
PARAM - use the vector-parameter MAX_LAYER_THICKNESS
FILE:string - read from a file. The string specifies
the filename and variable name, separated
by a comma or space, e.g. FILE:lev.nc,Z
FNC1:string - FNC1:dz_min,H_total,power,precision
The list of maximum thickness for each layer."
datatype: string