release v1.15

Author: kloetzl

andi-manual.pdf

@@ -1,4 +1,4 @@
-AC_INIT([andi], [0.15-beta])
+AC_INIT([andi], [1.15])
 AM_INIT_AUTOMAKE([-Wall foreign])
 
 AC_CONFIG_MACRO_DIR([m4])

configure.ac

@@ -276,9 +276,9 @@ \section{Options} \label{sec:options}
 ./andi ../test/1M.1.fasta -t 2  0,67s user 0,03s system 195% cpu 0,362 total
 \end{lstlisting}
 
-In the above examples the runtime dropped from \SI{0.613}{\second}, to \SI{0.362}{\second} using two threads. Giving \andi more threads than input genomes leads to no further speed improvement. \, The other important option is \lstinline$--join$ (see Section~\ref{sec:join}).
+In the above examples the runtime dropped from \SI{0.613}{\second}, to \SI{0.362}{\second} using two threads. Giving \andi more threads than input genomes leads to no further speed improvement. \, The other important option is \lstinline$--join$ (Section~\ref{sec:join}).
 
-By default, the distances computed by \andi are \emph{Jukes-Cantor} corrected \cite{jukescantor}. Other evolutionary models are also implemented (Kimura \cite{kimura}, LogDet \cite{logdet}, raw). The \lstinline$--model$ parameter can be used to switch between them.
+By default, the distances computed by \andi are \emph{Jukes-Cantor} corrected \cite{jukescantor}. Other evolutionary models are also implemented (Kimura \cite{kimura}, LogDet \cite{logdet}, raw and ANI). The \lstinline$--model$ parameter can be used to switch between them.
 
 Since version 0.9.4 \andi includes a bootstrapping method. It can be activated via the \lstinline$--bootstrap$ or \lstinline$-b$ switch. This option takes a numeric argument representing the number of matrices to create. The output can then be piped into \algo{phylip}. For more information on computing support values from distance matrices see \cite{afra}.